PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17347_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 371aa    MW: 40704.3 Da    PI: 10.3359
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17347_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.77.1e-11256277223
                                           --SS-EEEEEEE--TT-SS-EE CS
                                  WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                                            D+y+WrKYGqK++kgs++pr 
  cra_locus_17347_iso_2_len_1339_ver_3 256 ADEYSWRKYGQKPIKGSPYPRX 277
                                           69******************95 PP
2WRKY52.78.8e-173003402059
                                           S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                           f r+YY+C++  gCp++k+ver+++dpk++++tYegeH+h 
  cra_locus_17347_iso_2_len_1339_ver_3 300 FFRGYYKCSTVrGCPARKHVERATDDPKMLIVTYEGEHRHV 340
                                           679*****9888****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.7E-15208253IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.5E-30244340IPR003657WRKY domain
PROSITE profilePS5081124.834250339IPR003657WRKY domain
SuperFamilySSF1182909.94E-8253277IPR003657WRKY domain
SMARTSM007741.5E-32255341IPR003657WRKY domain
PfamPF031061.0E-6257277IPR003657WRKY domain
PfamPF031065.8E-14299339IPR003657WRKY domain
SuperFamilySSF1182908.37E-13299339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAMDFLGMSK IEEQIALQEA ASTGLKSMEH LIRLVSHEPQ VDCRELTDST VSKFKKAINV  60
MNRTGHARFR RAPLQQQQQQ QSQHVLPSSS SQPQFNVGLV PIPAPVSSSP ALTFQSQSLT  120
LDFTKPNFVV PNPNPAARLE SKPKVCDLVP PKPKDHFRMS PPLSTSVNSS SFMSSITGEG  180
SVSNGKPASS VLLSPPAVSA GKPPVYAKRC REHDIPVNIS GKPSASGKCH CKKRKSRVKR  240
IIRVPAISSK IADIPADEYS WRKYGQKPIK GSPYPRXLSY TAILDRPIKE IDLIXQLDRF  300
FRGYYKCSTV RGCPARKHVE RATDDPKMLI VTYEGEHRHV QGAMQENNAT PAPSAAVSAA  360
AAGPMVMFES T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-17243339271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082817.11e-137probable WRKY transcription factor 17
SwissprotQ9SV151e-104WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A068UXT11e-134A0A068UXT1_COFCA; Uncharacterized protein
STRINGXP_009625557.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31452250
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  3. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  6. Jiang CH, et al.
    Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.
    J. Exp. Bot., 2016. 67(1): p. 157-74
    [PMID:26433201]
  7. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]