PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16795_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 309aa    MW: 32087.3 Da    PI: 7.1611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16795_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016118140123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           ykC+ C+k Fs+   L  H  +H
  cra_locus_16795_iso_1_len_1314_ver_3 118 YKCSVCNKAFSTYQALGGHKASH 140
                                           9************9999998887 PP
2zf-C2H213.40.00023182204123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           ++C+ C+ksF++   L  H r+H
  cra_locus_16795_iso_1_len_1314_ver_3 182 HTCSVCHKSFPTGQALGGHKRRH 204
                                           79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-4118140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.83E-9118140No hitNo description
PfamPF139122.1E-12118141IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492118145IPR007087Zinc finger, C2H2
SMARTSM003550.0075118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576672.83E-9177204No hitNo description
PfamPF139122.4E-12181206IPR007087Zinc finger, C2H2
SMARTSM003550.041182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328182204IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MALEALNSPA AAAPRFPDAT DVNTFDSLTK RKRSKRPRSE TPPTEEEYLA ACLVMLARGR  60
GDDSVSVSAE TTTCSKPAAP APEPVASPNS TTSSAANTDS PPPPPPPQPQ SQNNGGNYKC  120
SVCNKAFSTY QALGGHKASH RVKPTTTAAA VDDNKPSTST SAGNGTVLIS NISALNPSGR  180
AHTCSVCHKS FPTGQALGGH KRRHYEGHIG GGGGGHSGGA GNTTSGVTSS EGGISSHKPH  240
DFDLNLPASP EFEFGLEVNV DCGIGSEIYV DHQEVEVESP MPLAAKKRRF SSPVHLSLAV  300
SHNENSRLD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240274.13e-84PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1J6JT637e-83A0A1J6JT63_NICAT; Zinc finger protein zat10
STRINGXP_009772006.12e-78(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495