PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16307_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 297aa MW: 33869 Da PI: 8.6398

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16307_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	3.9e-30	81	139	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ +tY+ eHnh+ cra_locus_16307_iso_1_len_1091_ver_3 81 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRIDPTMLMVTYTCEHNHP 139 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-31	78	141	IPR003657	WRKY domain
SuperFamily	SSF118290	1.09E-25	79	141	IPR003657	WRKY domain
SMART	SM00774	3.2E-35	80	140	IPR003657	WRKY domain
PROSITE profile	PS50811	31.938	81	141	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	82	139	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGSTRFMNIN TFMNDQDDSE NSAENSADSP RYALLNDTKM TSSTSNSPKK SRRSAQKRVI 60 SVPIKDVEGS RLKGEMGAPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER 120 SRIDPTMLMV TYTCEHNHPW PPSRNTNNHH NAAAIASTKK YPPAKQSPQI QENYKNKKII 180 KKSKKKPTIN ITTTTTSQTD INMDHDQKLA ATLSEYAGCN NNCWFSDFES MLESPPLMMN 240 DEARVTDADM AMFFTMRDED ESFFADLGEL PECSTVFRRG MMEREEEECR RHNLAPW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-21	54	141	3	79	Disease resistance protein RRS1
5w3x_D	8e-21	54	141	3	79	Disease resistance protein RRS1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024988156.1	1e-106	probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A068TKX2	1e-107	A0A068TKX2_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400073267	1e-102	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6475	23	33