PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15774_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 308aa MW: 33767 Da PI: 9.4053

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15774_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.9	2.7e-29	36	86	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt +LHerFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQ cra_locus_15774_iso_1_len_1488_ver_3 36 KPRLRWTADLHERFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQ 86 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-27	33	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-21	36	87	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.85E-13	36	87	IPR009057	Homeodomain-like
Pfam	PF00249	4.7E-7	38	86	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-24	165	211	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MESMFGGGGG GMGGGCYPYE RNGNGGAAVV MTRDPKPRLR WTADLHERFV DAVTKLGGPD 60 KATPKSVLRV MGLKGLTLYH LKSHLQVPPH FCTAYPLFFY RCKIIAHLAR TFQQQKYRLG 120 QQAKKQNGAE QNKENSGDSF GQFSSQASAS SSHSTRMNIE PGEIPITEAL KSQIEVQKRL 180 QEQLEVQKKL QMRIEAQGKY LQTILEKAQK SLSVEANNGN NVEATRAELS EFNLALSSLI 240 ENVKGEERKG GNVVDSRRKI CSSSSSYYGA KDDDSNDVKL TVEGGGSINF DLNTRSSSYD 300 FIGNSGAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-17	36	86	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-17	36	86	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-17	36	86	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-17	36	86	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084214.1	1e-120	myb family transcription factor PHL11-like
Swissprot	C0SVS4	7e-74	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A068UVY1	1e-118	A0A068UVY1_COFCA; Uncharacterized protein
STRING	EOY25282	2e-96	(Theobroma cacao)
STRING	Solyc08g076010.2.1	4e-96	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]