PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15469_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 442aa MW: 45688.8 Da PI: 6.9623

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15469_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	229	274	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq cra_locus_15469_iso_2_len_1875_ver_3 229 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 274 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-17	222	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.06E-13	222	278	No hit	No description
PROSITE profile	PS50888	17.39	224	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	226	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	229	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	230	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MTLHDLQNSH QQQNHFDPSN SQDDFLEQIL ISSSIPSSWP PDLSASATNS GSKPQSPWDS 60 LPQNPLASLE DQSALLTSKL RQHQIGGAKA MMLQQQLMLS RGLAGNGLRS PTTAAGNGGL 120 LPMPLSLNGN GGDVIDGSPF KSANPANDAS VQALYNGFAV SLGQTSNQSQ HFHHSQGGAM 180 QAQNFGATAG GAAPTMTQTT ASGSAGTGAA AQPRQQRVRA RRGQATDPHS IAERLRRERI 240 AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS 300 EGGGDCVQGN GRNGNGGTQA ASSSNNDSMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP 360 ISLATAISTA TCRNPMTSTN HHAHNGNPLL SSSAVNGGGI NGGEGGAAPS SPSMSVLTVQ 420 SATIGNVGAD MSVKDATSVS KP

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MTLHDLQNSH QQQNHFDPSN SQDDFLEQIL ISSSIPSSWP PDLSASATNS GSKPQSPWDS  60
LPQNPLASLE DQSALLTSKL RQHQIGGAKA MMLQQQLMLS RGLAGNGLRS PTTAAGNGGL  120
LPMPLSLNGN GGDVIDGSPF KSANPANDAS VQALYNGFAV SLGQTSNQSQ HFHHSQGGAM  180
QAQNFGATAG GAAPTMTQTT ASGSAGTGAA AQPRQQRVRA RRGQATDPHS IAERLRRERI  240
AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS  300
EGGGDCVQGN GRNGNGGTQA ASSSNNDSMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP  360
ISLATAISTA TCRNPMTSTN HHAHNGNPLL SSSAVNGGGI NGGEGGAAPS SPSMSVLTVQ  420
SATIGNVGAD MSVKDATSVS KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	238	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027072432.1	0.0	transcription factor bHLH66-like
Swissprot	Q9ZUG9	4e-86	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A068UPR8	1e-179	A0A068UPR8_COFCA; Uncharacterized protein
STRING	VIT_11s0037g00040.t01	1e-159	(Vitis vinifera)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]