PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15147_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 276aa MW: 31259.3 Da PI: 6.2627

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15147_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.7	4.6e-12	33	63	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k+ rr+++NReAAr+sR+RKka++++Le+ cra_locus_15147_iso_5_len_827_ver_3 33 DKVLRRLAQNREAARKSRLRKKAYVQQLENS 63 7999*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-8	27	76	No hit	No description
SMART	SM00338	2.0E-6	30	90	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.749	32	76	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.8E-8	33	63	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.13E-7	34	76	No hit	No description
PROSITE pattern	PS00036	0	37	52	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-29	121	195	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
VEAKLDNQSE DTSQGTYGPP SGKYDQEASK PIDKVLRRLA QNREAARKSR LRKKAYVQQL 60 ENSKLRLMQL EQELERARQQ GAYVGSGLDI SQISSSGIGH SGNTAFGIEY GNWVEERNRR 120 INDLKNALDS NISDGELHLL VDGAMNHYYD LFRLKALAAK SDVFYLLSGM WKTSVERLFL 180 WMGGFRPSEL LQIIMTPINP LTDEQLLHIY NLRQSCQQAE DALTQGMEKL HQYLGEAVLA 240 GQLGQGNYLP QMEAAMEKLE ALVRFVNQAD HLRQET

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077188.1	1e-142	TGACG-sequence-specific DNA-binding protein TGA-1A-like
Refseq	XP_027179172.1	1e-142	TGACG-sequence-specific DNA-binding protein TGA-1A-like
Swissprot	P14232	1e-134	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A068TYL9	1e-141	A0A068TYL9_COFCA; Uncharacterized protein
STRING	VIT_07s0031g01320.t01	1e-141	(Vitis vinifera)

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]