PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15147_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 309aa MW: 35027.3 Da PI: 6.4104 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.3 | 5.9e-12 | 66 | 96 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k+ rr+++NReAAr+sR+RKka++++Le+ cra_locus_15147_iso_2_len_924_ver_3 66 DKVLRRLAQNREAARKSRLRKKAYVQQLENS 96 7999*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-8 | 60 | 109 | No hit | No description |
SMART | SM00338 | 2.0E-6 | 63 | 123 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.749 | 65 | 109 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-7 | 66 | 96 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.78E-7 | 67 | 109 | No hit | No description |
CDD | cd14708 | 2.25E-21 | 67 | 119 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 70 | 85 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.4E-29 | 154 | 228 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
XVEAKLDNQV PIASFIXNDL RAIFSYRLVL HVLADFAINM QSEDTSQGTY GPPSGKYDQE 60 ASKPIDKVLR RLAQNREAAR KSRLRKKAYV QQLENSKLRL MQLEQELERA RQQGAYVGSG 120 LDISQISSSG IGHSGNTAFG IEYGNWVEER NRRINDLKNA LDSNISDGEL HLLVDGAMNH 180 YYDLFRLKAL AAKSDVFYLL SGMWKTSVER LFLWMGGFRP SELLQIIMTP INPLTDEQLL 240 HIYNLRQSCQ QAEDALTQGM EKLHQYLGEA VLAGQLGQGN YLPQMEAAME KLEALVRFVN 300 QADHLRQET |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00642 | SELEX | Transfer from LOC107771743 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077188.1 | 1e-138 | TGACG-sequence-specific DNA-binding protein TGA-1A-like | ||||
Refseq | XP_027179172.1 | 1e-138 | TGACG-sequence-specific DNA-binding protein TGA-1A-like | ||||
Swissprot | P14232 | 1e-130 | TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A | ||||
TrEMBL | A0A068TYL9 | 1e-137 | A0A068TYL9_COFCA; Uncharacterized protein | ||||
STRING | VIT_07s0031g01320.t01 | 1e-136 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA780 | 24 | 97 |
Publications ? help Back to Top | |||
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