PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15140_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22622.9 Da PI: 4.8109 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.2 | 7.5e-17 | 106 | 156 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+++AeIrdp + k r++lg++ t+e+Aa a+++ + k++g cra_locus_15140_iso_2_len_1000_ver_3 106 RYRGVRRRL-WGKFAAEIRDP---NkKGSRIWLGTYETPEDAALAYEEPAFKMRG 156 8*****877.**********9...4345***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.82E-28 | 105 | 166 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 106 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-34 | 106 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-21 | 106 | 165 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.9E-12 | 106 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.669 | 106 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MLDEITISAS DLALLSFIEE HLLSDSSEIL PNSDDDSSSN HLIDSSWEEI LLKSILEPEP 60 PAGSLSSESC SNSTATAAGS PSSESCCNSS TAAESSSEEN SEEWKRYRGV RRRLWGKFAA 120 EIRDPNKKGS RIWLGTYETP EDAALAYEEP AFKMRGSKAK LNFPHLIGSN ISEPVRVNPR 180 KRYRKLTTTS SSSSSEEDTE GRKKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 105 | 170 | 4 | 69 | ATERF1 |
3gcc_A | 1e-27 | 105 | 170 | 4 | 69 | ATERF1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00311 | DAP | Transfer from AT2G44840 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A192XLM4 | 1e-111 | A0A192XLM4_CATRO; ORCA3-like protein 1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |