PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1511_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

EIL

Protein Properties

Length: 322aa MW: 36429.6 Da PI: 4.7432

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1511_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	29.9	9.8e-10	2	109	274	353
XXXXXXXXXXXXXXXXXX.XXXXXXXXXX..............................XXXXXXXXXXXXXXX CS EIN3 274 vtlsceqkedvegkkeskikhvqavktta..............................gfpvvrkrkkkpses 317 + +++ +++dveg ++ +vq++k + ++++ rkrk ++ + cra_locus_1511_iso_2_len_1299_ver_3 2 FAINDTSEYDVEGVEDDPNFDVQEQKPSNlhllnmaadrfkdrlpgqpqphvikdellnNLDFGRKRK-PTNDL 74 678999****666666699**99**********************************9.77777 PP XXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 318 akvsskevsrtcqssqfrgsetelifadknsisqne 353 +++++++ tc+ q+++se +++f+d++ +++++ cra_locus_1511_iso_2_len_1299_ver_3 75 NIMMDHK-FFTCEFLQCPHSELRHGFQDRSTRDNHQ 109 7777775.6***********************98 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001666	Biological Process	response to hypoxia
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0071281	Biological Process	cellular response to iron ion
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
SFAINDTSEY DVEGVEDDPN FDVQEQKPSN LHLLNMAADR FKDRLPGQPQ PHVIKDELLN 60 NLDFGRKRKP TNDLNIMMDH KFFTCEFLQC PHSELRHGFQ DRSTRDNHQL TCPFRNSSQF 120 GVSNFHVNEV KPMVFPQQFV QSKAAAMPVN SNPPPFIDLS GLGVPEDGQR MINDLMSLYD 180 TNVQPHKNSD SGTGAVVKEQ PPLTQPGIQC QPDNYLQGQG LMMEAGNIFD DANLAHGRAM 240 FQPGDRYEDG TMQPTNRSMF HQGDRFDQCK MLNSPFNTNG NETFQFMFGS PFNIPSVDFS 300 EGLPGVSRDN IVPKQDIPIW YP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00367	DAP	Transfer from AT3G20770	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027163785.1	1e-171	protein ETHYLENE INSENSITIVE 3-like
Refseq	XP_027163794.1	1e-171	protein ETHYLENE INSENSITIVE 3-like
TrEMBL	A0A068VEZ0	1e-169	A0A068VEZ0_COFCA; Uncharacterized protein
STRING	XP_009587969.1	1e-126	(Nicotiana tomentosiformis)