PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13469_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 203aa MW: 23372.8 Da PI: 8.7876

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13469_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	52	71	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ cra_locus_13469_iso_1_len_605_ver_3 52 FSCPLCFKTFNRYNNMQMHM 71 89*****************9 PP
2	zf-C2H2	15.5	4.8e-05	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ cra_locus_13469_iso_1_len_605_ver_3 136 FMCRKCGKAFAVRGDWRTHEKNC 158 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.61	52	74	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	52	71	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	52	79	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.91E-8	52	74	No hit	No description
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.91E-8	131	156	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	134	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	136	156	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	136	156	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
XXYCDRSFKY HITDQLEVAA NGILTQAPAS TLHKGQYWIP TPAQILIGPT QFSCPLCFKT 60 FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAAGCRNNID HPRAKPLKDF 120 RTLQHIIKEN MXIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI 180 KAFGNGHAAY GIDSFEEEEE EDX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00197	DAP	Transfer from AT1G51220	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244736.1	1e-121	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-114	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1J6IJB6	1e-120	A0A1J6IJB6_NICAT; Zinc finger protein wip2
STRING	XP_009624990.1	1e-120	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]