PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13167_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CAMTA

Protein Properties

Length: 556aa MW: 61926.1 Da PI: 5.0315

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13167_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	118.4	3.5e-37	2	73	47	118
CG-1 47 vryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+een++fqrr+yw+Leee+++ivlvhy+evk cra_locus_13167_iso_3_len_1747_ver_3 2 LRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEERSHIVLVHYREVK 73 79*******************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	7.0E-29	1	73	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	55.349	1	78	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.9E-30	2	71	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
XLRYFRKDGH NWRKKRDGKT VKEAHERLKA GSVDVLHCYY AHGEENENFQ RRSYWMLEEE 60 RSHIVLVHYR EVKGNRTNLI RSREATEPIP DAQETEDDIR NSEAGSCSTS KFHPYDYQVA 120 SQVTDTASLN SAQASEYGDA ESAYNHQSSS SFHTYRDLQP PVMQKAEDRH SLPVPSIELV 180 LLVLLFFSFV CVAIVVAFGD EKSKFLLTDT YQVQFPGPPN MGFDPNATST GAPYMPEGQH 240 DFSTWRNVIE SGGLAGQPIN FQTSQVTNSS MMHGLLQQVL TDSLGTEPVS GSRTDGXGTV 300 AGSISLLHFQ YSLCGNYTQQ NFHASALLFL FIVASFPQSI LWLLSTDLMS LHVPNFALHT 360 SDYSYLICKQ TSEGDPLYIS KWPMDQKLHP DSANKLVASS SEDNIAGLHN SLAPYNVLSA 420 NQNTPQNDLP VHLGGANAGN SSKPAWNSNQ TIEGKADYPT MKQVLLDGVL EGGLKKLDSF 480 DRWMSRELGD VNDSHIQSSS TNYWESVGNE DDNSNITPPE QIDSYMMGPS LSQDQLFSII 540 DFAPNWAFSG SEVKVH

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

XLRYFRKDGH NWRKKRDGKT VKEAHERLKA GSVDVLHCYY AHGEENENFQ RRSYWMLEEE  60
RSHIVLVHYR EVKGNRTNLI RSREATEPIP DAQETEDDIR NSEAGSCSTS KFHPYDYQVA  120
SQVTDTASLN SAQASEYGDA ESAYNHQSSS SFHTYRDLQP PVMQKAEDRH SLPVPSIELV  180
LLVLLFFSFV CVAIVVAFGD EKSKFLLTDT YQVQFPGPPN MGFDPNATST GAPYMPEGQH  240
DFSTWRNVIE SGGLAGQPIN FQTSQVTNSS MMHGLLQQVL TDSLGTEPVS GSRTDGXGTV  300
AGSISLLHFQ YSLCGNYTQQ NFHASALLFL FIVASFPQSI LWLLSTDLMS LHVPNFALHT  360
SDYSYLICKQ TSEGDPLYIS KWPMDQKLHP DSANKLVASS SEDNIAGLHN SLAPYNVLSA  420
NQNTPQNDLP VHLGGANAGN SSKPAWNSNQ TIEGKADYPT MKQVLLDGVL EGGLKKLDSF  480
DRWMSRELGD VNDSHIQSSS TNYWESVGNE DDNSNITPPE QIDSYMMGPS LSQDQLFSII  540
DFAPNWAFSG SEVKVH

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download