PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1311_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 227aa MW: 25485.5 Da PI: 8.2971 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.9 | 7.3e-22 | 182 | 226 | 1 | 44 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaed 44 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed cra_locus_1311_iso_6_len_909_ver_3 182 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSIED 226 58***************************99***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-20 | 172 | 226 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.543 | 177 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-18 | 178 | 226 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-15 | 182 | 227 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-17 | 183 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEYTSLIDTS LDLNVKPLRL IDNGSLKQEV RSNFIDQLGR KMPLVKEEEN HGALMEELNR 60 VSAENQKLTQ MLTVMCENYD ALRKHLMDYM DKNPSSGGGG TDDINNNNNN NNASKKRKLA 120 ESSSNINNDT IVDAAVATTT NGPSESSSSD EGSCKKPREE HIKSKISRVY VRTEASDTSL 180 IVKDGYQWRK YGQKVTRDNP SPRAYFKCSF APSCPVKKKV QRSIEDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-14 | 167 | 226 | 1 | 57 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121557.1 | 2e-97 | probable WRKY transcription factor 40 | ||||
Refseq | XP_027124622.1 | 2e-97 | probable WRKY transcription factor 40 | ||||
Refseq | XP_027167435.1 | 2e-97 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 4e-62 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2U9IY44 | 1e-167 | A0A2U9IY44_CATRO; WRKY DNA-binding protein 40 | ||||
STRING | Solyc03g116890.2.1 | 7e-83 | (Solanum lycopersicum) |