PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12712_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 339aa MW: 38427.8 Da PI: 8.7522

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12712_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.1	5.1e-51	26	153	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 pGfrFhPtdeelv +yL++kve++++++ e ik++diyk++Pw+Lpk+ + ++kewyfF+kr +ky+++ r+n cra_locus_12712_iso_3_len_1166_ver_3 26 PGFRFHPTDEELVGFYLRRKVEKRPISI-ELIKQIDIYKHDPWNLPKASNVGDKEWYFFCKRGRKYRNSIRPN 97 9*************************.89***********98889****************** PP NAM 76 ratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 r+t sg+Wkatg d++++s+ ++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl cra_locus_12712_iso_3_len_1166_ver_3 98 RVTGSGFWKATGIDRPIYSAggeGRDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 153 ***************96555555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.535	24	185	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-55	25	185	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	26	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
XRVEDMNGGG VIVSGGKDEE DDVPLPGFRF HPTDEELVGF YLRRKVEKRP ISIELIKQID 60 IYKHDPWNLP KASNVGDKEW YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DRPIYSAGGE 120 GRDCIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPADHDLK TTKHIDAKTI AQEAEVWTLC 180 RIFKRNVSYR KCMPEWKDHQ PSSAKKLNPN NNNNNINTDA SSKACSFESN NDHDIRQTYI 240 SFSTSSPVIT TNNNQYDERK PLLFSGHADH ITRQMFMGQS HHHHHHQAPI SSNATLMSSA 300 CSEVTDQFFK HGDWDELRSV VEFGAAAAAA SAGSPSFLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	26	191	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	26	191	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	26	191	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	26	191	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	26	191	22	174	NAC domain-containing protein 19
3swm_B	1e-48	26	191	22	174	NAC domain-containing protein 19
3swm_C	1e-48	26	191	22	174	NAC domain-containing protein 19
3swm_D	1e-48	26	191	22	174	NAC domain-containing protein 19
3swp_A	1e-48	26	191	22	174	NAC domain-containing protein 19
3swp_B	1e-48	26	191	22	174	NAC domain-containing protein 19
3swp_C	1e-48	26	191	22	174	NAC domain-containing protein 19
3swp_D	1e-48	26	191	22	174	NAC domain-containing protein 19
4dul_A	1e-48	26	191	19	171	NAC domain-containing protein 19
4dul_B	1e-48	26	191	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027061099.1	1e-157	transcription factor JUNGBRUNNEN 1-like
Refseq	XP_027172552.1	1e-157	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	3e-93	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A068UZ64	1e-147	A0A068UZ64_COFCA; Uncharacterized protein
STRING	XP_009591286.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]