PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12489_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 184aa MW: 21447.5 Da PI: 5.268 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 50.3 | 5.1e-16 | 85 | 141 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ +++ + cra_locus_12489_iso_1_len_871_ver_3 85 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNHVSERHDQVLQ 141 689********************************************9998877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-14 | 81 | 145 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 83 | 146 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-13 | 85 | 135 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.6E-13 | 85 | 159 | No hit | No description |
Pfam | PF00170 | 5.6E-14 | 85 | 143 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.42E-18 | 86 | 137 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 88 | 103 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
XAETMQPSEA TELYYLLPSN PTQHPAHFGL NNNNMSAFHL SRLSNPLYHL QITPQVQDFN 60 LQACFSSNST SDEADEQQLS LINERKQRRM ISNRESARRS RMRKQKHLDE LWSQVVWLRN 120 ENHQLIDKLN HVSERHDQVL QENAQLKEEA SELRQMLSNM QLNSPFPNLR DLDDDDACDG 180 LSCD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 104 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00389 | DAP | Transfer from AT3G30530 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153840.1 | 1e-102 | basic leucine zipper 43-like | ||||
Swissprot | Q9FMC2 | 2e-44 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A068U1H7 | 2e-99 | A0A068U1H7_COFCA; Uncharacterized protein | ||||
STRING | XP_009603686.1 | 1e-88 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA947 | 24 | 92 |
Publications ? help Back to Top | |||
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