PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11055_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 422aa    MW: 44773.1 Da    PI: 7.9791
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11055_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39e-41882612133
                                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec. 73 
                                           ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ 
  cra_locus_11055_iso_5_len_1792_ver_3  88 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTs 160
                                           789******************************************************************9998 PP

                                   TCP  74 eaesssssasnsssg........................................kaaksaakskksqksaas 106
                                            + s +ss+s+ s +                                         + + +  + k++ ++++
  cra_locus_11055_iso_5_len_1792_ver_3 161 LNISLRSSGSSMSVPsqlrstyfspnfsmpqrrslfpgiglssdtssttllnfqsGNINPNLIQTKQELRDNN 233
                                           7777777777555556677778888888888888888988887777777777765344444456666666666 PP

                                   TCP 107 alnlak.esrakarararertrekmrik 133
                                           +l+l++  s ++   r+r  ++e ++++
  cra_locus_11055_iso_5_len_1792_ver_3 234 TLDLSEtPSEESTIGRKRRPEQEYQQQQ 261
                                           6666664444444444444333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.1E-4492264IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92394148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEGAGDDHHL HHHHHHHHRQ NFPFQLLEKK EDIESASCSS GGASASGFPS LAISSADNNN  60
QNQNPQRSTS SSLQITAAAA AEPSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ  120
LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS  180
TYFSPNFSMP QRRSLFPGIG LSSDTSSTTL LNFQSGNINP NLIQTKQELR DNNTLDLSET  240
PSEESTIGRK RRPEQEYQQQ QQQQHQLGSY LLQSSTGTMP ASHASIPANF WMVQAANSSN  300
QVMAGGGGGG GDPIWTFPNV NNTPAAAALY RGTMSSGLHF MNFPTPVALL PSHQQQLGGT  360
NIGSGGSGSG GNGGGNGLGD AQLGMLTGLN PYRSGGVAES PASGSHSHHG GDDRHDSTSH  420
HS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123737.10.0transcription factor TCP14-like
SwissprotQ93Z009e-70TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A068UVP60.0A0A068UVP6_COFCA; Uncharacterized protein
STRINGXP_009794435.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]