PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10701_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 363aa    MW: 39814.3 Da    PI: 8.4952
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10701_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11e-09201259563
                                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                           kr++r   NR +A rs +RK  ++ eLe+kv++L++e ++L  ++ +l+     l++e+
  cra_locus_10701_iso_3_len_1646_ver_3 201 KRAKRILANRQSAARSKERKMRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAEN 259
                                           9********************************************99998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-16197261IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174199262IPR004827Basic-leucine zipper domain
PfamPF001703.0E-8201255IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.8E-11201255No hitNo description
SuperFamilySSF579593.87E-11201253No hitNo description
CDDcd147031.21E-22202251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007231Biological Processosmosensory signaling pathway
GO:0008272Biological Processsulfate transport
GO:0009294Biological ProcessDNA mediated transformation
GO:0009652Biological Processthigmotropism
GO:0009970Biological Processcellular response to sulfate starvation
GO:0045596Biological Processnegative regulation of cell differentiation
GO:0051170Biological Processnuclear import
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0051019Molecular Functionmitogen-activated protein kinase binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDPKFTGKPI AAAQHLMSSG GGGRPEVDLD QMPDTPNRRA YHRRAQSETF FRFPDFDDDI  60
LLDDVVFDLP PAPSLSSDSN SNPNSMQQLQ AAATAKSNNS SAQVEAQPVR PEGKVHFRSL  120
SVDADFFEGL NFGASSSSSA DCAGGSAPSA AAVAGPRHRH SNSMDGSASA MTSSFEAMMV  180
DSTKKAMGAD RLQELALIDP KRAKRILANR QSAARSKERK MRYTSELERK VQTLQTEATT  240
LSAQVTMLQR DTTGLTAENK ELKLRLQAME QQAHLRDALN DALREEVQRL KIAAGQIPAP  300
NGNFNRAPSP QFSSQPPNFH QYSNHQAEQQ QQQQQIHMPR ATINNPTFSA LSKPSFMDFN  360
QKV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00184DAPTransfer from AT1G43700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149850.11e-141transcription factor VIP1
TrEMBLA0A068VJM71e-133A0A068VJM7_COFCA; Uncharacterized protein
STRINGVIT_18s0076g00330.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25072351