PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre14.g633789.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 866aa    MW: 86658.5 Da    PI: 6.1013
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre14.g633789.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161659146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        + +WT+ Ede +v a+++lG++ W+ ++r+++ gRt++++k+rw++
  Cre14.g633789.t1.2 16 KRPWTEAEDEAIVYAHAELGNK-WSQVSRHIP-GRTENDIKNRWHS 59
                        569*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.3911165IPR017930Myb domain
SMARTSM007178.8E-151563IPR001005SANT/Myb domain
PfamPF002495.0E-141659IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-141664IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-181861IPR009057Homeodomain-like
CDDcd001671.04E-111861No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MSGPNNDGLE GEFPRKRPWT EAEDEAIVYA HAELGNKWSQ VSRHIPGRTE NDIKNRWHST  60
VRGRNITRSS PLLPIYARTV APHCDEPEAR RAALQHALQR KQQLQQQEAL TQQQLHEQQQ  120
EQQQEQQQEQ RLASDYCCHS GEGNAAAAMT AAAAVLAAAS AAVSCSGAYG GTTPNTAAAG  180
LDVPPDFPPD CCLSSSGQQM LLPCGPTATT SDAGAGCAAM ADGVSAASEN GGGDSVVAED  240
RSSNVARRWA GTAAGDSAAA AGSRQRARTV PGLLPPAAAA ACKAAAAPNP MPPPAAAAAA  300
SPRSHQSLSS GLDTLGPGGC PGGSYGIQDV RCHLQQLLWQ ASHMLLDAPA AELMPAAAVV  360
QQPQQQLQQP ASAAAATAMA VATWSPLTSA ASAASTAPAP FCGLITSSSS QPHVQLQAQP  420
HSFDVSVTSA AHSSRLRQLV ACSGGYRSTL PPRTEHGHEV QQQQQQHTPM ALHHAAAAAV  480
ASAITGPHLP LAFHTYAQQQ WPTLAAAANL MASAPALTPG GVIGAAPAPT TAPGVGVGVG  540
GGGVGGVGGG GGMRFDALDA LLDQIDRMDA ALLAGIGPAS EAAAGEQGGL IDDAVMAELL  600
GAQPAAEPQQ QAAGPVLFVD VAMQQPPAPG SAESAAGACG WRAHGPGPQQ GAALVAAHTL  660
GGLPTRPHSA ISILGDGGGG GSSPSCLDIF EATARRSQLL PPAARPPLPP LRTTAGVGGG  720
GASGRVPFYT PSNTPSAAAA ASALTGTFGG GPYGNSSTAC SPLLLFGARC SNSTDRDAAA  780
AAGMSASQQG GGRSRLGLFR VAGGASHYHS DTSSSALLCL GARPAAAALV TDAHCTLGLG  840
ELDVQQVLAG VAGCCGGDDE DMMEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre14.g633789.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CYY00.0A0A2K3CYY0_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-12myb domain protein 118