PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre14.g609350.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 1163aa MW: 112399 Da PI: 6.6602

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre14.g609350.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.6e-10	50	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg WT+ E+ l++ + +lG++ W++I++ ++ R+++++k+ w++ Cre14.g609350.t1.1 50 RGEWTQAEEYVLARKHCELGNK-WTSISSFLP-SRSDNDVKNIWHST 94 89******************.*****.*******99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.805	45	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-13	46	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.61E-11	47	99	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-7	49	97	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-9	50	93	IPR001005	SANT/Myb domain
CDD	cd00167	3.58E-5	52	95	No hit	No description
PRINTS	PR01228	1.2E-5	600	611	No hit	No description
PRINTS	PR01228	1.2E-5	665	680	No hit	No description
PRINTS	PR01228	1.2E-5	690	700	No hit	No description
PRINTS	PR01228	1.2E-5	726	744	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence Send to blast
MEETEDGSEE CDGLAGLGQR KNNSISSRPR PAPAIISPPA VVESKKNATR GEWTQAEEYV 60 LARKHCELGN KWTSISSFLP SRSDNDVKNI WHSTLRSKNT ERRSFLRTYA RAVRDCANDS 120 GARRAAYDSA VRLCGTPQPI EQALAAVQQQ YQASLAAAAE RQLAGGGGGG GNDDGGGGSL 180 DNASSPSQGG GGDDGNSSEQ GGGSGSAGGG GGGSSSVQQQ QLSGQHPHLH LQQQQQQQQQ 240 HGSGHGHPHV AHVGGGGGGG GHELLSAAPD AAAAAAAAAG GGGGSPALYQ LLQHQQLQMQ 300 LMTSRGHISP VPSPLVRSGL HPAVAAMAGG GGIGGGGGVG GGMTQQQQQA CPSPLDALDA 360 AAAGSGAPYG RLPHMLMAAA SGGGGGGSGS SSRQHTHLLA VEGDAGGGGG GGGGGGGGSA 420 PPPDRASEVD SSCLARLSAL QLQDQLQRQQ AAMQQQQQQQ QQQQQHAAAA VAAHFGGGGG 480 GFSGGFSGGF DGTTGSSISS HPSRLLQAFG APLDGAPAVT LGGGFSGASV PLSGGHGHIH 540 LVQQQQQQQH LSQQEQYLSQ QHHQHLSQQQ QHLSQQQQHL SQQQHQLSQQ QQHLLLAAGG 600 GGVGGGGGGA GGLRADSGGS GLSQLRTLAA LQALQLQGQG LQGPQHSSQP HAYHSQSHPQ 660 LSMLGGGGGG GGGGGGGGGS GLLGGTMPGW GGGGGGGLAG SASELDDLLA LGMDLMPEEL 720 ALLAQGGGGG GGGGLAALQQ QQVQLQAQLQ QARVAADGEV IRAHSGGAGV GGGGLRVPVL 780 SMMGRSSGPQ HRWVGSAQPG VGAFGTAAVA VATTRSPTLS TTTSSQQQTQ LHALQPLPGG 840 GGGGNGGGGG GGSVELRHLG LAGSPQLSAG QPRGGQGQGQ GQGGPDAFDI LLAEFEAHSG 900 GAPGGGPNLA AAAAAGQSRQ GSGVQPHVLL AAGGGGPSGG LSGPAAVVQR LTAGGAQGQQ 960 QQQQQQLLPL SGGHAFMGDG VRAQLLAAAA VGGSSSGFNA GILSTLGLGQ PPPQPASGNR 1020 SWQLAAGGAG DADGWAGDML RQAPAGGGGG ANGTPLRPLS SPAVGFCADV GGGGAAGGAA 1080 AAASSGMAAG FMPLTGAATS GASAGSGAAA APGGGPGGGA MRSLHEPSAV DVVTMGLDSG 1140 ELLDCMDTDV PQQQGGGGGH AE*

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence Send to blast

MEETEDGSEE CDGLAGLGQR KNNSISSRPR PAPAIISPPA VVESKKNATR GEWTQAEEYV  60
LARKHCELGN KWTSISSFLP SRSDNDVKNI WHSTLRSKNT ERRSFLRTYA RAVRDCANDS  120
GARRAAYDSA VRLCGTPQPI EQALAAVQQQ YQASLAAAAE RQLAGGGGGG GNDDGGGGSL  180
DNASSPSQGG GGDDGNSSEQ GGGSGSAGGG GGGSSSVQQQ QLSGQHPHLH LQQQQQQQQQ  240
HGSGHGHPHV AHVGGGGGGG GHELLSAAPD AAAAAAAAAG GGGGSPALYQ LLQHQQLQMQ  300
LMTSRGHISP VPSPLVRSGL HPAVAAMAGG GGIGGGGGVG GGMTQQQQQA CPSPLDALDA  360
AAAGSGAPYG RLPHMLMAAA SGGGGGGSGS SSRQHTHLLA VEGDAGGGGG GGGGGGGGSA  420
PPPDRASEVD SSCLARLSAL QLQDQLQRQQ AAMQQQQQQQ QQQQQHAAAA VAAHFGGGGG  480
GFSGGFSGGF DGTTGSSISS HPSRLLQAFG APLDGAPAVT LGGGFSGASV PLSGGHGHIH  540
LVQQQQQQQH LSQQEQYLSQ QHHQHLSQQQ QHLSQQQQHL SQQQHQLSQQ QQHLLLAAGG  600
GGVGGGGGGA GGLRADSGGS GLSQLRTLAA LQALQLQGQG LQGPQHSSQP HAYHSQSHPQ  660
LSMLGGGGGG GGGGGGGGGS GLLGGTMPGW GGGGGGGLAG SASELDDLLA LGMDLMPEEL  720
ALLAQGGGGG GGGGLAALQQ QQVQLQAQLQ QARVAADGEV IRAHSGGAGV GGGGLRVPVL  780
SMMGRSSGPQ HRWVGSAQPG VGAFGTAAVA VATTRSPTLS TTTSSQQQTQ LHALQPLPGG  840
GGGGNGGGGG GGSVELRHLG LAGSPQLSAG QPRGGQGQGQ GQGGPDAFDI LLAEFEAHSG  900
GAPGGGPNLA AAAAAGQSRQ GSGVQPHVLL AAGGGGPSGG LSGPAAVVQR LTAGGAQGQQ  960
QQQQQQLLPL SGGHAFMGDG VRAQLLAAAA VGGSSSGFNA GILSTLGLGQ PPPQPASGNR  1020
SWQLAAGGAG DADGWAGDML RQAPAGGGGG ANGTPLRPLS SPAVGFCADV GGGGAAGGAA  1080
AAASSGMAAG FMPLTGAATS GASAGSGAAA APGGGPGGGA MRSLHEPSAV DVVTMGLDSG  1140
ELLDCMDTDV PQQQGGGGGH AE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre14.g609350.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3CX47	0.0	A0A2K3CX47_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12455	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	1e-10	myb domain protein 45

Link Out ? help Back to Top
Phytozome	Cre14.g609350.t1.1