PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre11.g476200.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 832aa    MW: 82258.8 Da    PI: 5.9472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre11.g476200.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-10306330126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +   G C++Gd+C++aHg
  Cre11.g476200.t1.2 306 WKTRICNKWKD-GNCPFGDTCRYAHG 330
                         8**********.*************9 PP
2zf-CCCH37.34.7e-12372397227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+ C+ f+r  tC+yGdrC+FaH++
  Cre11.g476200.t1.2 372 KTRMCDEFMRAQTCRYGDRCSFAHSQ 397
                         89**********************97 PP
3zf-CCCH38.71.7e-12468493227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC++++ t tC+yGd+C+FaHg+
  Cre11.g476200.t1.2 468 KTRLCDRWMSTKTCQYGDKCTFAHGQ 493
                         8***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-7304336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-14304337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544305332IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7305331IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7306330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-9369403IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075370398IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4370397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-14371404IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8372397IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432466494IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-9466498IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5466493IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-14467499IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10468493IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MFNNPYAMMG QMGQGQGQMG AGQQGQMNAQ QGQMGGQMGG QMGGQMGNQM QGMGQMGQQQ  60
QQPAGQQQGN AMAGMQGGMM QGMQGMGGMG MGAMQGMGGM GNNAMGGGMV AAGGNAAGQG  120
QAAGAATGAL PAAMQAMMGG QQGAGGAAGM QNMQQMMQQL QQQGMNPANM ANWQQAMASN  180
PQAMAAMQAY MQQYAMRMAA FQRMAAQAAT GGMAGPGGMA GPGVMGMPGA MGAPGMGGPM  240
GGPMGMGGPM GMGGMGMGGP PGAMGAMMAG GHGPGGMGGG PRPGMMGGHG HGPGGGGDGP  300
EGTRFWKTRI CNKWKDGNCP FGDTCRYAHG DADLRTPHMN GPGGPGGPRG GPVGPAGGGG  360
PLPPPKIGIM HKTRMCDEFM RAQTCRYGDR CSFAHSQAEL RPVPAGRYVP PGAQQAQGGA  420
AAAGGDKGAA PAAGTGAPPA AGGAAPAAGA APAAAGGAAA AGGDAMHKTR LCDRWMSTKT  480
CQYGDKCTFA HGQHELRQRP AGAFGRGTAQ RQAGGKPGAP GAPGAGDQQQ GGAPPAVGSK  540
REREGSAEPG SGGGDDADAD GAGANKRQHT TAGGSDGGED GAGGHAQAQE SEGAGGDGGD  600
WGDHGDDKAW GDGEGDGEAE AYNGGADGGE GDGEGHQGAA GGLDSYGSVG AEEAAAGAKV  660
KQEEAAGGAA AGAGGECELC AKLARAGRDK LLAALQAQGS PAVQKLGAMV LALSPRLDQL  720
WHKLSFGQLQ SMITKADLSV ADRVELLKSL CFHTHVSGEE RERLDSQKYV SQGLPAEVAD  780
FVAMVLADGK EGTAQMNEYF AALEVCKQLY GVNDEEYFNV SSTMANLFMN M*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.80800.0normal conditions
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre11.g476200.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3D8C60.0A0A2K3D8C6_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP551277
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-08C3H family protein