PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre11.g467577.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family M-type_MADS
Protein Properties Length: 896aa    MW: 86738.1 Da    PI: 5.8211
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre11.g467577.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.21.4e-101050242
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        ri ++  rq  f + ++ ++  A ELSvLCd +v +i+f++
  Cre11.g467577.t1.1 10 RITDDKTRQEVFHRHKQALFRRAMELSVLCDCDVGLIVFAP 50
                        89999999999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.811149IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-12168IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-18383IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-121051IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MSRGKVQLQR ITDDKTRQEV FHRHKQALFR RAMELSVLCD CDVGLIVFAP GSSGPGTGGQ  60
RLYQFSSIEM EELLERYAGA VNEPHERRGN SELMRHYYEL SPDEDGEGGE PGPLEGDADG  120
GGASAAAAAA AATMAAVDSV ILGSGRRRES RDGMAPGGGA GALLRRMVPG GLPGGLHGQL  180
QLQGLQGLQG LQGLQGPMQG MVGMLPSGLG SGGIGSGGLT PGGGGGGGGA LQLPTPGGLG  240
GGGGLPGGLM PGGMRRVGGA VPLEGIKAAG FLDKRNYPVS PRSERAYEDI TAEFDKLTEL  300
RNKRARSGGA SQTVPTGLQP LSSSAAAALN PQQQLSQLLM QQQQQQQHLQ HQHQHNLQQF  360
DSGGAKRFKP LSIMVPDNQA HPILPSGVTP LTGPTPMSGG GPGGAASGMA SASAAGGVGM  420
GGTGGRGGPA GLAGGSGAPA LNGHFLPHSQ QQHQSQHQQQ AQHQQQQGQQ GLPPRAPSSS  480
GRPFGAGRTS LSGIASALAA AQQAAGAAGG GAAGSGPMDT DGGGGAFTFD RRTLTGALDD  540
LGISFAPMRM SSDGSAAAML SMPSPPPHGA TAALFGALDG GPLSVRSSSH GMLAALGMGS  600
GMVGLERGTS VGLSGLLESP GPMALDSSLR GLAPMDVLDW PSSSPRSSAG NSEGGGGGSG  660
ATTGGFASDD GEGGTVLDGL EVRGMALSKL APEARVAAIG TSSPDGGGGT PPATRGTAAG  720
AGAGAAGTGS AAAGGSGGGS LPAAGGGAGS AFAAANAKAA AASAAAGAGA EGASANASGD  780
AGPEAAAAGL GGSFARATSY ELFAANVAGA ADGLTPELSF DVLSGAKAAA AAASVAAAQL  840
QQEAAERKAA EEEAEGSGGE GGSGEVADLG LMVVGRALEI PAGAGTGTPP PPAPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18194185MEF2C
5f28_B4e-18194185MEF2C
5f28_C4e-18194185MEF2C
5f28_D4e-18194185MEF2C
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre11.g467577.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3D7B60.0A0A2K3D7B6_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36561314
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.13e-15AGAMOUS-like 19