PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre09.g399552.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 674aa    MW: 67918.6 Da    PI: 7.2148
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre09.g399552.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.7e-121051144
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                        r  W+    ++l++++ +lG+  W+ Ia+ ++ gRt ++ck+++
  Cre09.g399552.t1.1 10 RPDWSRAQSLRLIQLHVKLGNS-WTEIAKQLP-GRTQNDCKNFF 51
                        668*****************99.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.34E-10556IPR009057Homeodomain-like
PROSITE profilePS5129416.618559IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-13856IPR009057Homeodomain-like
SMARTSM007177.3E-9957IPR001005SANT/Myb domain
PfamPF002492.9E-101052IPR001005SANT/Myb domain
CDDcd001672.71E-71351No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MTETDHRRSR PDWSRAQSLR LIQLHVKLGN SWTEIAKQLP GRTQNDCKNF FFGALRAKRG  60
YRDNLVYAYA RALPPASASA CGSWEQDKRG PDALTRAAAY KAAMQQVAAQ EVAEQMEKQQ  120
RSQQQEGEDG GCGSGAAGAT AEDGGEPGAV AAASRRSSSV SVGADGAAPT AQGDGMDTQE  180
DAASAPACPA SAAASPVGPG DVSVRRLSST GDTVVTDAAG TRTVVAAGVV AGGWRSVAAA  240
ASMPAHPAAV VSMPPVVPAS VVAAASGVLG AAAVPAAGAP GDRLSLQSLQ PPPHGFAALP  300
QSAAPAIGSS SASPFWQHQQ QHHLMGPRVQ LLSHESLALL HQQHQQAQQH SHVVLHVAPP  360
FLQQHHQNPH HQHLMVQLEG AGAGAPAGAF QLQHHQHLHP HHVQGSGPAD GSSGPVLLMG  420
PAGPHAAALQ LLGSHPHHQH QHHQQLVLLP SSVPGAPPQH VLLPMAVRPP HLLQYGGAHG  480
ASAAASAAAA APSAGMGAFV FHPHPQQQQL PPAAAAAFAA ASAAPSQPAA VAAAVHSLAP  540
AASAALSLSG SSVLEATTTT TRITTTTAAA VAAAAAGAAV AAGVKTEPAS AEAATGWAQQ  600
QQQKAHAGVS RSCSSSSSSS AACGACSTCT AGVGATPATA TQLPQHQQDH QLLGDDWCAG  660
DEEWAELGRI LLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.27120.0normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre09.g399552.t1.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1680900.0AB168090.1 Chlamydomonas reinhardtii Lcr1 mRNA for low-CO2 inducible Myb transcription factor LCR1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DEW70.0A0A2K3DEW7_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.19e-10myb domain protein 57