PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre09.g389750.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C2H2
Protein Properties Length: 388aa    MW: 38474.4 Da    PI: 9.715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre09.g389750.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-06341363123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F+++ +L++H  ++
  Cre09.g389750.t1.1 341 YRCHMCSRTFNDPVMLVQHSERC 363
                         9******************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.45E-102176No hitNo description
Gene3DG3DSA:4.10.1110.101.9E-92379IPR000058Zinc finger, AN1-type
PROSITE profilePS510398.3223081IPR000058Zinc finger, AN1-type
PfamPF014281.2E-83371IPR000058Zinc finger, AN1-type
SuperFamilySSF576673.59E-6209234No hitNo description
SMARTSM003550.22211234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261211239IPR007087Zinc finger, C2H2
PROSITE patternPS000280213234IPR007087Zinc finger, C2H2
SuperFamilySSF576673.59E-6336359No hitNo description
SMARTSM0035524341361IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MTSGQDPNAL FEQHTRTDCD PANYDRVHKK PRCPVAGCKT KLTTINRYRC KHCSQAICLK  60
HRDPADHRCA EVQAANRQQR GGFFSSRPPA ATSAAAASSS GRSSGAASAA SSRPPSAPRP  120
APGAASSVTT TSPAAARRPS PQELHAAAAR QYEDPDNSLR GTAARRAAQA AAPPPPAQSR  180
WPWQSTPLTT GTGTSTSTSN ANPLVPPHRP EKCPQCGAAF ETVARLIQHV EDFHPSQQPV  240
GTSTAAGGGP AGGGAAGPDA AGGAGAGAGG AGFFSNPLRG LAGTTIAGGP APAGGGTFGG  300
FGGAVGVQTD VNRGAGGGGG GGSLLSSGAG SGPGADGREV YRCHMCSRTF NDPVMLVQHS  360
ERCGAAARVG AGRGGGSGAS KDTCVLS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre09.g389750.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001694559.11e-102predicted protein, partial
TrEMBLA0A2K3DDL40.0A0A2K3DDL4_CHLRE; Uncharacterized protein
STRINGEDP025541e-102(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP481244
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.15e-15C2H2 family protein