PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre06.g291500.t1.2

Common Name

CHLREDRAFT_195860, RWP6

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 939aa MW: 96119.1 Da PI: 5.3096

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre06.g291500.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	54.8	1.9e-17	726	770	5	49
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 i+++dl++y++ pik+AA+ Lg +++ LK iCR++G++ WP+Rk+ Cre06.g291500.t1.2 726 ITVDDLRHYYEVPIKEAARRLGYSVSCLKNICRRLGVPNWPSRKL 770 899*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.335	715	793	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-16	726	770	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence Send to blast
MASPGMEAPS VDDLIRRSQC LNADDGDREL LELGANPDLL LTSQPDVWMA ADRGGGDGGD 60 SYDADPAHQA LRHLPTAVAA QPAGSGQVMA FSASPASAAV GAAATIDALL RSPCGIANMP 120 AAHASDWLSA PAVFGNAVLD SAIPTPAQVL TAAAAAGRGG DAAACGGNMA AMRLDQQLLA 180 ELPCISGPAA LPSFWGGRTG MTTVSAAMET SRGGLLLSGT AAAGGAFSSS ATHGRPSSSA 240 MLLQPPLLAQ PTCMPQLPAQ TGGALLFRPP QPQPQSGSCT DAVQLAKEWR SGYDEFLMSE 300 GGPAGDFLDW GGGCGAAMPP PPPPPLQPYS GSNYSSAGSQ QLQQSPWSTG GALQAVAAGN 360 NSLTLLHTVG GRLAHMQQGR QRQGPAQTLS ASGAVAAPGF TSGVIGQAFC TSANATATAT 420 AVAERLRTRK QKHAQAPMVG SSPRVLDLLE PEPAGVGASG TYVLGPDGEP PREYQRSLQQ 480 PASASQLPRL SQPASPLQLR RLQHPQPAQS SQPLPLPLPQ SAPLLQLPPP LRPPEPKEPA 540 AWRQQAPAAP AAAEVGPAGT GDVHVVVKLD VPVATAVSQQ AYTGVGAAQL RLVEAMDVQQ 600 EEQEKVEEAE EDPEPGAEKM AAPAGAAKGA DSGAKSWSSR QGPRAAVGHK AAQAREKARA 660 AVGWPLEEAA GVSMGCSSGG GGGNAPRASP EQDDEDDGCC DTGAADDDDD DDDDGPAGNG 720 RDGRVITVDD LRHYYEVPIK EAARRLGYSV SCLKNICRRL GVPNWPSRKL LTLQKMRGAL 780 LGADAAANGI RAGGAGAASG QEAAEARLER ERLLERLALN IADIYADPHT PMYPEFMRVR 840 QLQYKSRANA RLARRSCSGR AGGGSISSSK AADSSRSGSK AADGSGSGTE GGGRGEESRG 900 RAAGGVAKRR ARRDRSLRGI CEDTKEGSEV MEGSQDME*

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence Send to blast

MASPGMEAPS VDDLIRRSQC LNADDGDREL LELGANPDLL LTSQPDVWMA ADRGGGDGGD  60
SYDADPAHQA LRHLPTAVAA QPAGSGQVMA FSASPASAAV GAAATIDALL RSPCGIANMP  120
AAHASDWLSA PAVFGNAVLD SAIPTPAQVL TAAAAAGRGG DAAACGGNMA AMRLDQQLLA  180
ELPCISGPAA LPSFWGGRTG MTTVSAAMET SRGGLLLSGT AAAGGAFSSS ATHGRPSSSA  240
MLLQPPLLAQ PTCMPQLPAQ TGGALLFRPP QPQPQSGSCT DAVQLAKEWR SGYDEFLMSE  300
GGPAGDFLDW GGGCGAAMPP PPPPPLQPYS GSNYSSAGSQ QLQQSPWSTG GALQAVAAGN  360
NSLTLLHTVG GRLAHMQQGR QRQGPAQTLS ASGAVAAPGF TSGVIGQAFC TSANATATAT  420
AVAERLRTRK QKHAQAPMVG SSPRVLDLLE PEPAGVGASG TYVLGPDGEP PREYQRSLQQ  480
PASASQLPRL SQPASPLQLR RLQHPQPAQS SQPLPLPLPQ SAPLLQLPPP LRPPEPKEPA  540
AWRQQAPAAP AAAEVGPAGT GDVHVVVKLD VPVATAVSQQ AYTGVGAAQL RLVEAMDVQQ  600
EEQEKVEEAE EDPEPGAEKM AAPAGAAKGA DSGAKSWSSR QGPRAAVGHK AAQAREKARA  660
AVGWPLEEAA GVSMGCSSGG GGGNAPRASP EQDDEDDGCC DTGAADDDDD DDDDGPAGNG  720
RDGRVITVDD LRHYYEVPIK EAARRLGYSV SCLKNICRRL GVPNWPSRKL LTLQKMRGAL  780
LGADAAANGI RAGGAGAASG QEAAEARLER ERLLERLALN IADIYADPHT PMYPEFMRVR  840
QLQYKSRANA RLARRSCSGR AGGGSISSSK AADSSRSGSK AADGSGSGTE GGGRGEESRG  900
RAAGGVAKRR ARRDRSLRGI CEDTKEGSEV MEGSQDME*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre06.g291500.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001695529.1	0.0	RWP-RK transcription factor
TrEMBL	A8J2J3	0.0	A8J2J3_CHLRE; RWP-RK transcription factor
STRING	EDP01787	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6094	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	9e-09	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cre06.g291500.t1.2
Entrez Gene	5721097

Publications ? help Back to Top
Merchant SS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 2007. 318(5848): p. 245-50 [PMID:17932292]