PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g278136.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 576aa    MW: 60233.5 Da    PI: 5.3795
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g278136.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08728426
                        ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                        +lC+ ++ +G C++G+ C F+H 
  Cre06.g278136.t1.1  7 VLCK-YHISGACRFGSDCAFSHN 28
                        79**.*****************7 PP
2zf-CCCH23.59.4e-083655525
                        --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                         C+f+++ G C yGdrC++ H
  Cre06.g278136.t1.1 36 VCKFYLA-GNCAYGDRCRYDH 55
                        6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.23330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6328IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5429IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5728IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5832IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6013158IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-63356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-53557IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-53655IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.502345373IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032346372IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.18E-11409479No hitNo description
Gene3DG3DSA:3.30.40.101.2E-10412480IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136399.0E-7414472IPR001841Zinc finger, RING-type
CDDcd001623.40E-6414475No hitNo description
PROSITE profilePS5008912.46415472IPR001841Zinc finger, RING-type
SMARTSM001841.4E-6415471IPR001841Zinc finger, RING-type
PROSITE patternPS005180438447IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.35501529IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.399501530IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSERSQVLCK YHISGACRFG SDCAFSHNLS DLPSQVCKFY LAGNCAYGDR CRYDHRRPDW  60
SKAGQLRQQQ QQHVQPAQPH ASSAGAAGPS SRALRGDPYV AVWDAREPTD PSRLPPALAA  120
AAAAASPSGP APSGPGAAPS ATASRGPAWG LAAGAKAPVA TGAAAGRAAG GGGGAEPADE  180
WEHVAEAVAA AEAAEAAAAA GRRGLVLIDD DVGLEQEARR LEQERGQRAA EGAGARPSVV  240
SGAAAAAAGA AGAAGSLPWS PDLDPWDQRG GAGGEREAGG EEGYYDPYYD EYGEYGEGEE  300
GHEGEEQAGY EAGGEEGQEG PAGQGAGWWS GAGAGAGAGG EAVDPADLEL CPAFALHGRC  360
AEGEDCPLIH GLECETCHKW RIHPYNEAAA AEHAAECRLR HARLEARLRS ADVECGICLE  420
HVMHKPSVSD RRFGLMDCDH AFCLACIRSW RERNTDASLA TDTAVRTCPI CRTCTHFVTP  480
SLVWPATAEE KEAIVGAYKA KLGTIDCRHF AFGDGTCPFS TSCFYRHAYR DGRLEVPVLR  540
RAGNADGEVR VVAPLRLSAF LDTPQAQRLL GGRRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g278136.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001698099.11e-162predicted protein, partial
TrEMBLA0A2K3DNY20.0A0A2K3DNY2_CHLRE; Uncharacterized protein
STRINGEDO996841e-162(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.22e-59C3H family protein