PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre06.g275350.t1.1

Common Name

ROC40

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 1557aa MW: 151102 Da PI: 9.2284

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre06.g275350.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.3	1e-14	52	96	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++++a k++G W++I +++ ++t+ q++s+ qk+ Cre06.g275350.t1.1 52 RERWTDEEHARFLEALKLYGRA-WRKIEEHVS-TKTAVQIRSHAQKF 96 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-15	47	102	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.128	47	101	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.8E-15	50	99	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-12	51	99	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-11	52	95	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-8	52	96	IPR009057	Homeodomain-like
CDD	cd00167	3.24E-8	54	97	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1557 aa Download sequence Send to blast
MKEAKSPKSG PAALPAQQPS SAGPSAGPSQ QADQESTPKI KARKPYIITK QRERWTDEEH 60 ARFLEALKLY GRAWRKIEEH VSTKTAVQIR SHAQKFINKL ERNKDSGSTK DGEGIRIPPP 120 RPKRKPSRPY PRKEPILADH SGSGAGDVSG INVSGMNVSG INGAAATATG TATGTATATA 180 SQGTGLAQQQ QQQQSKLSLP VPPRSSAMPL QPPTAALQQL QLQLPLGLGQ PQPPALAPAV 240 AAAAAAAAVV KQQQHQQQQH HLLLERSLPS SQYSEVSEAT VAAVAAAASA AAAAAAAAVV 300 AAAGQQVQAH LQAHPPQGFP FFGLPPSLLA QITLQNPALE TMSWAGGATG GTGGTSGTSV 360 PTHAQPHANG SAAAGGLSAG GTGIGVGANG GAGSLAAGAT GSTTGAAGRP NWDLGTLLWP 420 APASYDRHHH LHHHHHHHHH HSAERGHPGT LAEATATTND AENPSAMLGE DLMGRLGQMM 480 GVAGGQESRG SDGNSVVTER EGEQGGGGGG GAVAGDDGPE AEETGQDACA EDAGQGAQSN 540 LTDDGQWAKL GPGAELEQQL AAGGAMATSK YWHMLGAAAG HPPRDGHGGV GLGPITHKSH 600 SHGGTRTTGS GGGVRAKAGA GAKAHAHKEA RDQHKKSSAR DASPRRYSDV SGHVRGGHHH 660 RDRDLLAHPH SSHHHVPPSP SIQEHAGGLK RDAGGRHVAS SDDTNGSDSQ QPPNTETREA 720 QGSNPTNHNN GNGNGSSGNG SAGNGNGSGS QGNGSQGNGN NGSSGNGHSG GNGHSGGNGH 780 SGGNGHSGGN GHSGGSGGAG GSGGNGNGHS IKDSNNPTGN GNGNGYSSAN GTSHHHHLHP 840 HQHLHGLQRM PAYDAGRYPS HHETQDREGN GASGIGVRPP SGSDEDDNNG LNGLNGSGGA 900 GGGAAAGDAA GGSGSGGAGA EVGASAAPDG SRSAGGSGPS ASGKAGGIKG AGVSGSDGSG 960 GAGGKAAKGG SGDGRSGSLG SGAAGFRRPA EGTLALGLLA TAPDRPVGQI AGSAFSVPAP 1020 SITRGGNGNT GASGNVANAA AAAGTGGSND GAGATHGGSG SGGNGGAGGS SGGSVAGAAA 1080 VAAVLEVSQV QALLAQLHAQ ASLVPYHAAP GAGLAPSFAQ QAMHTATAGA QPFFATASAA 1140 ASAIQQGLLG AAHQQQQQQT LVATAAAAAA IAGSGSAAAA SAAASAAAAA AVASAAGSGS 1200 AASSMSQLLT LAKSARRDAR VPVEAFDVAA AVAAMAAAAG SGDLDATNAA ELAQLQQVAA 1260 AAAEPRVSAA AAADLLPPRG GRGGSGSNTV PPLPLAAPES LLALAAAAQQ ESEQQQQLLQ 1320 QQQQAALPSR KSVSSAAASA LPRRAGSFTA AGASLVSSRG ASPARAGAAS PSDLASAAAA 1380 AVPSDRRRRA VLLVDSSANK ALAAAAVVAV GDVEMATVAT SMSALGAGSS AAAAAVALSD 1440 VPSGSTTVEA LRNAVVLGLD PVRAPPLYAG DGSPPPPPAL PLPVPVLPRS VPTRVLSVSA 1500 AELPPPPPLP QAKAAAAARP DAKRTSSVAL GDGDGAAAGT ADPPPRLPPR KRHHQL*

Sequence ? help Back to Top

Protein Sequence Length: 1557 aa Download sequence Send to blast

MKEAKSPKSG PAALPAQQPS SAGPSAGPSQ QADQESTPKI KARKPYIITK QRERWTDEEH  60
ARFLEALKLY GRAWRKIEEH VSTKTAVQIR SHAQKFINKL ERNKDSGSTK DGEGIRIPPP  120
RPKRKPSRPY PRKEPILADH SGSGAGDVSG INVSGMNVSG INGAAATATG TATGTATATA  180
SQGTGLAQQQ QQQQSKLSLP VPPRSSAMPL QPPTAALQQL QLQLPLGLGQ PQPPALAPAV  240
AAAAAAAAVV KQQQHQQQQH HLLLERSLPS SQYSEVSEAT VAAVAAAASA AAAAAAAAVV  300
AAAGQQVQAH LQAHPPQGFP FFGLPPSLLA QITLQNPALE TMSWAGGATG GTGGTSGTSV  360
PTHAQPHANG SAAAGGLSAG GTGIGVGANG GAGSLAAGAT GSTTGAAGRP NWDLGTLLWP  420
APASYDRHHH LHHHHHHHHH HSAERGHPGT LAEATATTND AENPSAMLGE DLMGRLGQMM  480
GVAGGQESRG SDGNSVVTER EGEQGGGGGG GAVAGDDGPE AEETGQDACA EDAGQGAQSN  540
LTDDGQWAKL GPGAELEQQL AAGGAMATSK YWHMLGAAAG HPPRDGHGGV GLGPITHKSH  600
SHGGTRTTGS GGGVRAKAGA GAKAHAHKEA RDQHKKSSAR DASPRRYSDV SGHVRGGHHH  660
RDRDLLAHPH SSHHHVPPSP SIQEHAGGLK RDAGGRHVAS SDDTNGSDSQ QPPNTETREA  720
QGSNPTNHNN GNGNGSSGNG SAGNGNGSGS QGNGSQGNGN NGSSGNGHSG GNGHSGGNGH  780
SGGNGHSGGN GHSGGSGGAG GSGGNGNGHS IKDSNNPTGN GNGNGYSSAN GTSHHHHLHP  840
HQHLHGLQRM PAYDAGRYPS HHETQDREGN GASGIGVRPP SGSDEDDNNG LNGLNGSGGA  900
GGGAAAGDAA GGSGSGGAGA EVGASAAPDG SRSAGGSGPS ASGKAGGIKG AGVSGSDGSG  960
GAGGKAAKGG SGDGRSGSLG SGAAGFRRPA EGTLALGLLA TAPDRPVGQI AGSAFSVPAP  1020
SITRGGNGNT GASGNVANAA AAAGTGGSND GAGATHGGSG SGGNGGAGGS SGGSVAGAAA  1080
VAAVLEVSQV QALLAQLHAQ ASLVPYHAAP GAGLAPSFAQ QAMHTATAGA QPFFATASAA  1140
ASAIQQGLLG AAHQQQQQQT LVATAAAAAA IAGSGSAAAA SAAASAAAAA AVASAAGSGS  1200
AASSMSQLLT LAKSARRDAR VPVEAFDVAA AVAAMAAAAG SGDLDATNAA ELAQLQQVAA  1260
AAAEPRVSAA AAADLLPPRG GRGGSGSNTV PPLPLAAPES LLALAAAAQQ ESEQQQQLLQ  1320
QQQQAALPSR KSVSSAAASA LPRRAGSFTA AGASLVSSRG ASPARAGAAS PSDLASAAAA  1380
AVPSDRRRRA VLLVDSSANK ALAAAAVVAV GDVEMATVAT SMSALGAGSS AAAAAVALSD  1440
VPSGSTTVEA LRNAVVLGLD PVRAPPLYAG DGSPPPPPAL PLPVPVLPRS VPTRVLSVSA  1500
AELPPPPPLP QAKAAAAARP DAKRTSSVAL GDGDGAAAGT ADPPPRLPPR KRHHQL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Cre.19683	0.0	normal conditions

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre06.g275350.t1.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB363965	0.0	AB363965.1 Chlamydomonas reinhardtii ROC40 mRNA for RHYTHM OF CHLOROPLAST 40, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B1B5J4	0.0	B1B5J4_CHLRE; RHYTHM OF CHLOROPLAST 40

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP454	14	27
Representative plant	OGRP1255	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46830.1	3e-29	circadian clock associated 1

Link Out ? help Back to Top
Phytozome	Cre06.g275350.t1.1

Publications ? help Back to Top
Matsuo T, et al. A systematic forward genetic analysis identified components of the Chlamydomonas circadian system. Genes Dev., 2008. 22(7): p. 918-30 [PMID:18334618]