PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre03.g149400.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 2124aa MW: 209767 Da PI: 5.0179

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre03.g149400.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	64	2.5e-20	1881	1930	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ + l+ ++lpi++AA L++++TvLK+ CR++ I+RWP+Rk++s+ Cre03.g149400.t1.1 1881 RQLTKQSLKDVYHLPINEAAAALNIGVTVLKKYCRKFSIPRWPYRKLNSV 1930 58999*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.153	1865	1950	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-19	1882	1930	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 2124 aa Download sequence Send to blast
MDLDVPDLLA DFNPGAGLVV PIASVGQALL PLARNLPKEE LENVDVTGLD ALLSSDPSAL 60 NDVTFQRSSP SAPTPQATPT APSTSARPGS STTLAAGASV HQPYLREQQR QTLPHLPSLS 120 GFASAGAGQQ PACPAGSHLG PAAALGGTQA CLSKISDPGC GKQTTSNRSS LSQMDEDGGD 180 DAGAPEHEAQ DVRNGDSGRG DGGGGGHMYA SEPPRGPEPM TLISGCSETA SGHRIDGGEA 240 PSVSHSPSGA GGGASAPGAA GGASGATRPE QAETAPSRMS ANHQLPGADP TAGASPRNGS 300 GIAAADGDAE GSGDGDGDEE EEEEDDEELG DALAGAPAEG AVSGSRPAKA ARSKAQPRGR 360 RPKAAKQDGG GEGGSDSEDE DGGESRHLGR RVIEYAEKIV EQAWAANQLS DVPHTATLDC 420 NELPGIGFKK AGRILATAAV RLLVRGEEAQ KKGTLRTLLR SAENAGILAQ QGGPAGAAGI 480 AAGGGAARGT AGGADMGASA AAAAAAAAAV ASMPNLASMD PETLRVCLAA AAAAAAAAAG 540 TPSATSGVTQ QPQTHAQANA IVNLASELQQ HGLGQWAVQA AAEVAMKAAA AVLQQQQQHA 600 AAAAAADPRG AGSSVDAGPS SLNLLTAAAV GPPDMRHFGG FAAAPSHAAA GGNMATLYSA 660 QGNPRVEPAA APGPFQQMVL EAALADDCNP DGGAGAGLTT GGELECTLSG PRSSTDELLQ 720 AVFDGMGDPG GARALTGNSG GGPSGGSNVV AGVAEPRKSD GAAWDLLGQM FDSYCGGGAP 780 AAATDTQASV SLPHRQHHQP LQLPLPHVSL QHPALAMIAA AEAAGPTGGF RLNGGSITML 840 DAWVDAQNDE HVDAAVVAAM VAGDDDVPRL HDTLGPVVGG AATAACADGA GLSTASRQHQ 900 HQHPQQQAAP TPTLLAPMPV RGGGGAGVSA LADVSPGDHS PGSDGGGLMA PPQPRPPICI 960 SPPPEDLDPS ELRDDFPDLP LTASMFRISN MSIADGPPAP GSARPSASAF GANPFGQFGA 1020 AGGVGGGGTP NRLSNALSIL RAGSAGCMDM LMSNDFMDAL AAADPLLAAE VSAGGAAGGG 1080 GRASHADKFL MSIDALPPVP PLLPPSLIPP GYANALVMTT GDAGAGLSNS GPLSAAAGAA 1140 GYRRHQQGME AHAALERVAE EQPDVDAEGT EEPEEEWGQG RRPRRGAASR AVTARSGAPR 1200 EVLQEGEDEG EDDGGTVAAA PWAARAAGSS RGVPSARRQL VPASPMSSPM MTSPMRSPTA 1260 PARTFVEGPT AAAAVAAAGA IMAPQCRAVA GVLGGGTTSI ALGGNGHRGA PPQAAPGPSS 1320 FSAPFGGGGG GSSLSGNSQG GPVTARALFM MDGAGGLAGG GGGAGVTFAD GLGGDCAPSL 1380 MPPPPPFQHG HGHGHHNLFA DPRYGAAAHD LEAMNRQQLS APAVLEHPGA AMLCAGAGDA 1440 TATSTSGVSG GGCGGGVGGG SVVSSAADPS GGLFAGPAAM LASLTAAAAA GGGVMGMAAS 1500 APQPQVPVGL VSMGTGHSSG SQLYASAASV APGGGGGLWA EQPQVQLQQH TLHTPAPGMQ 1560 QHAHSQAAPD VLSLQQLHSR DKASPLRSAS FSRGSVGSST RSPRRAHLNA AIQAVVKAAS 1620 ASPSPSPLAR GSDGRVIRRG AGAAAAAGFA GSMESPLAGS AAAAAGGNSR AGSVAPQLPP 1680 LPTLPQLPQL PQLSPVPQYA PHSDLGDGAA HHGLTAEMGL AAYDGVTAAG VADGAAAAAE 1740 EAKEASTLAA AIAAATTGGG SVDGFTRKKG GAKAAGGGRA GRGAKRGGAG SADIGSGSDD 1800 MDAGSAPSGG GAAPTAERPS GVGRLGAAAP SGRGSQMDSG DEESGGGGGG DEEGDGGGVS 1860 GGGEGVSVVN LRKVTQDGAP RQLTKQSLKD VYHLPINEAA AALNIGVTVL KKYCRKFSIP 1920 RWPYRKLNSV NKLMETFERY KRDALLGGNV TGGEECEVVL QSLGKMKVEL YEDPDKDIDE 1980 RIKKLRQANF KVEYRARQDT TGKQQQPQQQ QHQDEFQQLL QQQLQQHLMQ QQQQQMFLPQ 2040 QQQQQQQQQE LPGAQGQQML MPVGDGFGMH GGMPQGAAGM LPAMPPPFLL PPFNPAALPS 2100 QFLPEGSAQG FGGGCPAANP TNF*

Sequence ? help Back to Top

Protein Sequence Length: 2124 aa Download sequence Send to blast

MDLDVPDLLA DFNPGAGLVV PIASVGQALL PLARNLPKEE LENVDVTGLD ALLSSDPSAL  60
NDVTFQRSSP SAPTPQATPT APSTSARPGS STTLAAGASV HQPYLREQQR QTLPHLPSLS  120
GFASAGAGQQ PACPAGSHLG PAAALGGTQA CLSKISDPGC GKQTTSNRSS LSQMDEDGGD  180
DAGAPEHEAQ DVRNGDSGRG DGGGGGHMYA SEPPRGPEPM TLISGCSETA SGHRIDGGEA  240
PSVSHSPSGA GGGASAPGAA GGASGATRPE QAETAPSRMS ANHQLPGADP TAGASPRNGS  300
GIAAADGDAE GSGDGDGDEE EEEEDDEELG DALAGAPAEG AVSGSRPAKA ARSKAQPRGR  360
RPKAAKQDGG GEGGSDSEDE DGGESRHLGR RVIEYAEKIV EQAWAANQLS DVPHTATLDC  420
NELPGIGFKK AGRILATAAV RLLVRGEEAQ KKGTLRTLLR SAENAGILAQ QGGPAGAAGI  480
AAGGGAARGT AGGADMGASA AAAAAAAAAV ASMPNLASMD PETLRVCLAA AAAAAAAAAG  540
TPSATSGVTQ QPQTHAQANA IVNLASELQQ HGLGQWAVQA AAEVAMKAAA AVLQQQQQHA  600
AAAAAADPRG AGSSVDAGPS SLNLLTAAAV GPPDMRHFGG FAAAPSHAAA GGNMATLYSA  660
QGNPRVEPAA APGPFQQMVL EAALADDCNP DGGAGAGLTT GGELECTLSG PRSSTDELLQ  720
AVFDGMGDPG GARALTGNSG GGPSGGSNVV AGVAEPRKSD GAAWDLLGQM FDSYCGGGAP  780
AAATDTQASV SLPHRQHHQP LQLPLPHVSL QHPALAMIAA AEAAGPTGGF RLNGGSITML  840
DAWVDAQNDE HVDAAVVAAM VAGDDDVPRL HDTLGPVVGG AATAACADGA GLSTASRQHQ  900
HQHPQQQAAP TPTLLAPMPV RGGGGAGVSA LADVSPGDHS PGSDGGGLMA PPQPRPPICI  960
SPPPEDLDPS ELRDDFPDLP LTASMFRISN MSIADGPPAP GSARPSASAF GANPFGQFGA  1020
AGGVGGGGTP NRLSNALSIL RAGSAGCMDM LMSNDFMDAL AAADPLLAAE VSAGGAAGGG  1080
GRASHADKFL MSIDALPPVP PLLPPSLIPP GYANALVMTT GDAGAGLSNS GPLSAAAGAA  1140
GYRRHQQGME AHAALERVAE EQPDVDAEGT EEPEEEWGQG RRPRRGAASR AVTARSGAPR  1200
EVLQEGEDEG EDDGGTVAAA PWAARAAGSS RGVPSARRQL VPASPMSSPM MTSPMRSPTA  1260
PARTFVEGPT AAAAVAAAGA IMAPQCRAVA GVLGGGTTSI ALGGNGHRGA PPQAAPGPSS  1320
FSAPFGGGGG GSSLSGNSQG GPVTARALFM MDGAGGLAGG GGGAGVTFAD GLGGDCAPSL  1380
MPPPPPFQHG HGHGHHNLFA DPRYGAAAHD LEAMNRQQLS APAVLEHPGA AMLCAGAGDA  1440
TATSTSGVSG GGCGGGVGGG SVVSSAADPS GGLFAGPAAM LASLTAAAAA GGGVMGMAAS  1500
APQPQVPVGL VSMGTGHSSG SQLYASAASV APGGGGGLWA EQPQVQLQQH TLHTPAPGMQ  1560
QHAHSQAAPD VLSLQQLHSR DKASPLRSAS FSRGSVGSST RSPRRAHLNA AIQAVVKAAS  1620
ASPSPSPLAR GSDGRVIRRG AGAAAAAGFA GSMESPLAGS AAAAAGGNSR AGSVAPQLPP  1680
LPTLPQLPQL PQLSPVPQYA PHSDLGDGAA HHGLTAEMGL AAYDGVTAAG VADGAAAAAE  1740
EAKEASTLAA AIAAATTGGG SVDGFTRKKG GAKAAGGGRA GRGAKRGGAG SADIGSGSDD  1800
MDAGSAPSGG GAAPTAERPS GVGRLGAAAP SGRGSQMDSG DEESGGGGGG DEEGDGGGVS  1860
GGGEGVSVVN LRKVTQDGAP RQLTKQSLKD VYHLPINEAA AALNIGVTVL KKYCRKFSIP  1920
RWPYRKLNSV NKLMETFERY KRDALLGGNV TGGEECEVVL QSLGKMKVEL YEDPDKDIDE  1980
RIKKLRQANF KVEYRARQDT TGKQQQPQQQ QHQDEFQQLL QQQLQQHLMQ QQQQQMFLPQ  2040
QQQQQQQQQE LPGAQGQQML MPVGDGFGMH GGMPQGAAGM LPAMPPPFLL PPFNPAALPS  2100
QFLPEGSAQG FGGGCPAANP TNF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1448	1460	SGGGCGGGVGGGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Cre.18461	0.0	normal conditions

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre03.g149400.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001695568.1	0.0	RWP-RK transcription factor
TrEMBL	A0A2K3DVL1	0.0	A0A2K3DVL1_CHLRE; Uncharacterized protein
STRING	EDP01355	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-22	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cre03.g149400.t1.1