PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g144747.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 1389aa    MW: 139615 Da    PI: 8.82
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g144747.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.7e-154087346
                        SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46
                        +WT+eE + l+ +v +lG++     +W  +ar ++ gRt+kqc+++w +
  Cre03.g144747.t1.1 40 PWTQEETDWLITVVSRLGTDnydaiNWQEVARQVP-GRTGKQCREKWKN 87
                        8**********************************.***********87 PP
2Myb_DNA-binding35.72.1e-1195137145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W+  E+  l+ a+ ++G++ W+ +ar+++ +R ++ +k+rw+
  Cre03.g144747.t1.1  95 KDPWSLKEEYVLALAHSLHGNR-WSEVARYLP-TRPENTIKNRWY 137
                         689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.0583393IPR017930Myb domain
SMARTSM007173.2E-133791IPR001005SANT/Myb domain
SuperFamilySSF466891.99E-2338136IPR009057Homeodomain-like
CDDcd001671.51E-114087No hitNo description
PfamPF002494.8E-144087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-174095IPR009057Homeodomain-like
PROSITE profilePS5129412.05794144IPR017930Myb domain
SMARTSM007174.7E-1094142IPR001005SANT/Myb domain
PfamPF002492.5E-1095137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1596140IPR009057Homeodomain-like
CDDcd001671.49E-797137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1389 aa     Download sequence    Send to blast
MSRRYYDDSD SDVDLRSGRS RSSASRRYDY GAKRKEASRP WTQEETDWLI TVVSRLGTDN  60
YDAINWQEVA RQVPGRTGKQ CREKWKNDLR PNISKDPWSL KEEYVLALAH SLHGNRWSEV  120
ARYLPTRPEN TIKNRWYATN RAKAEVKLRT FLWLYTDLVD RQSFPAGPEA IDLARDLYRK  180
LPDVVPLEEF EVPVDFYIGE SGLPSADTRP EIKIIGRGKA KPHVPGSTQV GGGGKGGGKS  240
SGAASRAARA AAAATVAAPS GSNPSSGAAG GAAAGSGGGS AGGGGGGASE GDANCYVKVG  300
GLLPGGAVAA EMVPAAGSAV KPPAPPQRKR KASVLALEAA AGAAAKPGGS GGSGGSGGQQ  360
RKQLSGDVAM KLSESTLSEE GAVRLGAVGG GAAAHMQLGG GGGGMAAPTA SATGGAARSP  420
LGADGSSGGI VGGPHGHGHG HMHPGGHPGS YPYPHPYPHA RAHSPVDAEL LWQTAMEGFS  480
GSPARKVPRI GGPRLSAGGR GGGSSGGSHI TSSAGGGGGG LFGPGGPGGP GGPMMHPGAG  540
GGYPGAAGMD PSLDPYGAHH GHAGSIMPYG FRLPGSGSDG GAGGGSPGGG PSHPYAAHPH  600
HMHHAHHHPH SHLYPPHHAP HPHSYPSHMD PHGGGPGGPS GGGALPPLPG GGNGGGSEGG  660
AGDIGALMMM GHGDGDIFGL TDGLDLASLT ALMGPGEGGH GGGEAGGAGD MAMAHEAMAG  720
LHADAMLSGL TLGAQHQQHQ QGHQQGHQQG HHQQQQQQQR QQQQQGQAQQ QQQQGGASSS  780
LHEQQQQQQG QALTPRGGGA RGSGSGPVTS TTPSTPLSHP PPGPTPAHVP HTVTTLPPQL  840
QAVASSPFPV HPLRQAASQG SALQGAASAP LAAGGHPHYP PHSHLHPHHP HRSVAHSMSQ  900
GSYPLPPLQP PPSSSSLQGL QAHDSGAAGP EAAAAAAQLP IRGSLPFPPA AQQHSQQQQQ  960
QPLQHSHSQP HQHHQHQHQP LEMLEGEHPA AAPQPSSSQA AGAESSGAAP PPPAAGGLPP  1020
HGGHGAVMLH PGVRQRLPSG HPPPMHPHHM HPAYLYGPYG PPPPGYGPPP PGYGPPPPHL  1080
VPPPGRVPLP PMHPAASAAR SSSSQAPGGA VGPPPGYPGG PPPPGYPGGP PPPYMRAYYK  1140
SAGSRPGVPR GMLPYPPPYM HMYGPPPPHH GMPPPGYPDY PPHPMAPPHH PHAHPDASGG  1200
GSGGGPASTS GGGAAGSTAA GGPPYTPVKG GPGAPPPLAG YDPMMPSAYP PIPGGSSGSG  1260
PHHHHHHHLH AQHHQQQHHQ QHRLSSVQSD PSMVSAAAAA AGMYHPHYPP YPGYGPPPPH  1320
SGSVTSGGGS ASTHGGQMVV AGRTMAMTPA EAAAGGGGDM AMMSRMGSEP VAAATSPAGQ  1380
QPDMHGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25401459109B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g144747.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DV550.0A0A2K3DV55_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1143523
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-26myb domain protein 118