PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre02.g113450.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 1208aa    MW: 118288 Da    PI: 6.013
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre02.g113450.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.7e-115897142
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42
                        r +W+ eE+  l ++++q+G   W++Ia++++ gRt  ++k+
  Cre02.g113450.t1.1 58 RPPWSREEEAVLCRLHAQWGCS-WSRIAKELP-GRTSSEVKN 97
                        789*****************77.*********.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.95853107IPR017930Myb domain
SuperFamilySSF466899.36E-1054107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1256101IPR009057Homeodomain-like
SMARTSM007172.7E-1057105IPR001005SANT/Myb domain
PfamPF002496.7E-95897IPR001005SANT/Myb domain
CDDcd001676.42E-664103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1208 aa     Download sequence    Send to blast
MLGSLAAKES SPVQPTNSAD WDVDTGEDEV TEEDSEDPES GSNRRGNGHG ATRRRSRRPP  60
WSREEEAVLC RLHAQWGCSW SRIAKELPGR TSSEVKNICK KLKARSLLRA YARALSSRGD  120
RSDDAAARME AFRIAVRMTN DAGRDSDGGG PEDAPDGLPA LALAGTGGSG GGLGPGGLGA  180
GELQGVGAGG TGLEAGPLGG GAGPLALALP GLSGGAGGGR GALSGLGLAG GSGGPLDAGL  240
AARLAGAGLL SGNGPCRTGS SGDPCNNGPN PTTHPSSPDR SNPHADNAAA AAAVAQLNEL  300
HDGIYSSRAS GGNGNGTITA AARGGGADKN GGAPQLPPAD RLVAALMQGT GLEGAGGQGE  360
GGSAGVKLEG GLNGASVDGA VGGAGPDDGW APNGRAGGSA PAGGSGGNGQ MPEDVVEELQ  420
QLRGLPPQVL QQLLAKGVSP AALQVMLLQT RLEHGGGPLE PGPGPGPRQA LEGSASDSQR  480
GLEQQQAQQQ SWDGARATPP PPQRQLKLEE REAHSRHDEA QRAADCAEPR VRVKAEAEDL  540
GGRAGIDDAA RRQPSDNNDS RADSGARTSH QQTSTRGQEG LRAQGRAAKT QLQASQSHRA  600
GPQQDEAPDN GRRGAGASKA PQQPQPLQLL PTLAAGSIEA AVRSNGALAA AVEGEASGNS  660
NGNGAAAGSL PARRESDDER LDGSRGARPG LLQVSLRPHQ GDQPSPMADG DARGDGGAAL  720
RALAAGSIAG GGGGHPLQAL AAAMAANGGA VGAGGLGGVL AGIAAARDGG GGLSRLEQLA  780
ALINGGGGGG PGGGGGEQQL GLPGGQNFAM LNGGGGGGGG MLGALLAEAQ RGRAAAAAAA  840
GLGPLGTEAE EGALMELIRV SLAEAEAAEA ARARAANRAL EAAARLMQAR QARARAGAQL  900
PPESMIANAL ASARARMAGS AGPPGGDELL SRLALLQSLQ AGGGGPAAAE LAAMLGAARG  960
GGNGSDNGSG NGGGGSKRHA QSDDEREQLP PRKRQQAYLD SDNGPALGGG RGGGGGGGPL  1020
LPLHHLQLAN MAGACGLGPG PGGQWGGAVL DSQPQQQQPQ QQQQQQQLLA DMRGLLSGLN  1080
GGGGGPGGRA REQDMLDMLR HRAAAAMAGA GMGGGGGGGL GHLRGPAGAR GMLQVDDDGP  1140
GAAMAAMAAE AVMRRQGTGL LESQDSMGEM AQTLLGFSQM AAQTLGGSEP AVGGGGAGSS  1200
GRKGQRW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110081016GGRGGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.95471e-139normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre02.g113450.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3E3300.0A0A2K3E330_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-06myb domain protein 21