PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre02.g111200.t3.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 1032aa MW: 104592 Da PI: 7.099

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre02.g111200.t3.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.3	1.3e-11	16	58	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT E+ l++ + lG++ W++I+++++ gR+++++k+ w+ Cre02.g111200.t3.1 16 KPPWTLAEEASLAKWHSILGNR-WAAISKYLP-GRSENDVKNMWH 58 579*****************.*****.*******996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.064	11	65	IPR017930	Myb domain
SMART	SM00717	7.8E-10	15	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.99E-10	16	59	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-10	16	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-12	18	58	IPR009057	Homeodomain-like
CDD	cd00167	3.85E-8	18	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence Send to blast
MSYDASTFSA REPGRKPPWT LAEEASLAKW HSILGNRWAA ISKYLPGRSE NDVKNMWHVS 60 NGAGSTVRAK SCRRSSLLFN YCRAVKDCSD DATARRAAFE RTQQQCAGSP IPSPGVGGGA 120 GVGGTLAAGG AGGGAGGAGG PVRMLPTKRS SAPGAQQLLG LYAAQSPSGL LRAGQALLER 180 PFSGSVTDQL DSGILGSEPL DPAGGHDSMT HLDYSPAAGG GASRRPRAAT ATGLGLSGTC 240 ETTLYHHNDH RGGGGPGDGG LGGVLSSGTL SGGAGGPGGG GLGDGGGGGG QSREAFQLLH 300 HGSRPTSFNG VASGSHSPQQ LGYSRMGLQH QQQQQQQQQQ QQLQQAAAVG HGGIVGLDRA 360 ASMPHRTSLP GSTGLLGVPD YGRRVDGAAY DAGPNSGGSA ALGGYAGSQS GYAASQYGQH 420 PSQQQQQLLQ MQAAQQQQQQ QLYASNQMQL QQQGGRYDSG GSAHGGPSRL THMVLNAGDG 480 SQHGGLGPRS SQDLSPHHNQ QQHQAYHYQQ QQQQQLTYAQ QQQQGQQQQP HFEFHQHHQV 540 PPQHQYGGGY IPAPQHTQQQ QSYGMHPQHP QQQQQQQQQH RTSINGGMSL MSIDTDTRTG 600 PDGPHYRTNV NAGGGAPVGP DAAAYAEAQY QQQLLQQQQY YQQQQQYPPY QQQPQRPSSG 660 TVSAAGLMSS GGGGGGGGAG VGGFGGGNGG GYDGRPGHSD NGYGDAGSPH GGPDSRITTG 720 GGVGSDGAPG PQYGASARQS RPSSGPRQEA VVGDDGGGPD GADAVHTEQQ QQQQARAMAI 780 MAIAAASGSQ RGSQRGRAMS GTSNAFDELD ALLEQIDVME DNEALTLNYL AVAGGSNRGA 840 AAAQHAAAAA GSAGGMDGGH FDLQPQPRYQ QQQQQQEPQQ QYLFSGLAPP AQQQHEHLQD 900 GPSSGAAGHV PGTGMLFGGG AGAGGPGGPG GPGGCGLLGS ATFSALLMNV DGGAAGAGGR 960 GNMAPAGPPP AIAGGPPGGQ RTGSMTSQRH HASMDVVTMG LGDEDIAGMM AALAGSRGQG 1020 GQGPAGGVGG R*

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence Send to blast

MSYDASTFSA REPGRKPPWT LAEEASLAKW HSILGNRWAA ISKYLPGRSE NDVKNMWHVS  60
NGAGSTVRAK SCRRSSLLFN YCRAVKDCSD DATARRAAFE RTQQQCAGSP IPSPGVGGGA  120
GVGGTLAAGG AGGGAGGAGG PVRMLPTKRS SAPGAQQLLG LYAAQSPSGL LRAGQALLER  180
PFSGSVTDQL DSGILGSEPL DPAGGHDSMT HLDYSPAAGG GASRRPRAAT ATGLGLSGTC  240
ETTLYHHNDH RGGGGPGDGG LGGVLSSGTL SGGAGGPGGG GLGDGGGGGG QSREAFQLLH  300
HGSRPTSFNG VASGSHSPQQ LGYSRMGLQH QQQQQQQQQQ QQLQQAAAVG HGGIVGLDRA  360
ASMPHRTSLP GSTGLLGVPD YGRRVDGAAY DAGPNSGGSA ALGGYAGSQS GYAASQYGQH  420
PSQQQQQLLQ MQAAQQQQQQ QLYASNQMQL QQQGGRYDSG GSAHGGPSRL THMVLNAGDG  480
SQHGGLGPRS SQDLSPHHNQ QQHQAYHYQQ QQQQQLTYAQ QQQQGQQQQP HFEFHQHHQV  540
PPQHQYGGGY IPAPQHTQQQ QSYGMHPQHP QQQQQQQQQH RTSINGGMSL MSIDTDTRTG  600
PDGPHYRTNV NAGGGAPVGP DAAAYAEAQY QQQLLQQQQY YQQQQQYPPY QQQPQRPSSG  660
TVSAAGLMSS GGGGGGGGAG VGGFGGGNGG GYDGRPGHSD NGYGDAGSPH GGPDSRITTG  720
GGVGSDGAPG PQYGASARQS RPSSGPRQEA VVGDDGGGPD GADAVHTEQQ QQQQARAMAI  780
MAIAAASGSQ RGSQRGRAMS GTSNAFDELD ALLEQIDVME DNEALTLNYL AVAGGSNRGA  840
AAAQHAAAAA GSAGGMDGGH FDLQPQPRYQ QQQQQQEPQQ QYLFSGLAPP AQQQHEHLQD  900
GPSSGAAGHV PGTGMLFGGG AGAGGPGGPG GPGGCGLLGS ATFSALLMNV DGGAAGAGGR  960
GNMAPAGPPP AIAGGPPGGQ RTGSMTSQRH HASMDVVTMG LGDEDIAGMM AALAGSRGQG  1020
GQGPAGGVGG R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre02.g111200.t3.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001699697.1	0.0	predicted protein
TrEMBL	A0A2K3E307	0.0	A0A2K3E307_CHLRE; Uncharacterized protein
STRING	EDP07393	0.0	(Chlamydomonas reinhardtii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	7e-11	myb domain protein 45

Link Out ? help Back to Top
Phytozome	Cre02.g111200.t3.1