PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre02.g111200.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 1040aa MW: 105518 Da PI: 7.1114

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre02.g111200.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.4	1.2e-11	16	58	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT E+ l++ + lG++ W++I+++++ gR+++++k+ w+ Cre02.g111200.t1.1 16 KPPWTLAEEASLAKWHSILGNR-WAAISKYLP-GRSENDVKNMWH 58 579*****************.*****.*******997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.982	11	65	IPR017930	Myb domain
SMART	SM00717	4.3E-10	15	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.79E-10	16	60	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-10	16	58	IPR001005	SANT/Myb domain
CDD	cd00167	3.89E-8	18	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.4E-13	18	58	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence Send to blast
MSYDASTFSA REPGRKPPWT LAEEASLAKW HSILGNRWAA ISKYLPGRSE NDVKNMWHVS 60 IPTPPASHVV PQSTVRAKSC RRSSLLFNYC RAVKDCSDDA TARRAAFERT QQQCAGSPIP 120 SPGVGGGAGV GGTLAAGGAG GGAGGAGGPV RMLPTKRSSA PGAQQLLGLY AAQSPSGLLR 180 AGQALLERPF SGSVTDQLDS GILGSEPLDP AGGHDSMTHL DYSPAAGGGA SRRPRAATAT 240 GLGLSGTCET TLYHHNDHRG GGGPGDGGLG GVLSSGTLSG GAGGPGGGGL GDGGGGGGQS 300 REAFQLLHHG SRPTSFNGVA SGSHSPQQLG YSRMGLQHQQ QQQQQQQQQQ LQQAAAVGHG 360 GIVGLDRAAS MPHRTSLPGS TGLLGVPDYG RRVDGAAYDA GPNSGGSAAL GGYAGSQSGY 420 AASQYGQHPS QQQQQLLQMQ AAQQQQQQQL YASNQMQLQQ QGGRYDSGGS AHGGPSRLTH 480 MVLNAGDGSQ HGGLGPRSSQ DLSPHHNQQQ HQAYHYQQQQ QQQLTYAQQQ QQGQQQQPHF 540 EFHQHHQVPP QHQYGGGYIP APQHTQQQQS YGMHPQHPQQ QQQQQQQHRT SINGGMSLMS 600 IDTDTRTGPD GPHYRTNVNA GGGAPVGPDA AAYAEAQYQQ QLLQQQQYYQ QQQQYPPYQQ 660 QPQRPSSGTV SAAGLMSSGG GGGGGGAGVG GFGGGNGGGY DGRPGHSDNG YGDAGSPHGG 720 PDSRITTGGG VGSDGAPGPQ YGASARQSRP SSGPRQEAVV GDDGGGPDGA DAVHTEQQQQ 780 QQARAMAIMA IAAASGSQRG SQRGRAMSGT SNAFDELDAL LEQIDVMEDN EALTLNYLAV 840 AGGSNRGAAA AQHAAAAAGS AGGMDGGHFD LQPQPRYQQQ QQQQEPQQQY LFSGLAPPAQ 900 QQHEHLQDGP SSGAAGHVPG TGMLFGGGAG AGGPGGPGGP GGCGLLGSAT FSALLMNVDG 960 GAAGAGGRGN MAPAGPPPAI AGGPPGGQRT GSMTSQRHHA SMDVVTMGLG DEDIAGMMAA 1020 LAGSRGQGGQ GPAGGVGGR*

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence Send to blast

MSYDASTFSA REPGRKPPWT LAEEASLAKW HSILGNRWAA ISKYLPGRSE NDVKNMWHVS  60
IPTPPASHVV PQSTVRAKSC RRSSLLFNYC RAVKDCSDDA TARRAAFERT QQQCAGSPIP  120
SPGVGGGAGV GGTLAAGGAG GGAGGAGGPV RMLPTKRSSA PGAQQLLGLY AAQSPSGLLR  180
AGQALLERPF SGSVTDQLDS GILGSEPLDP AGGHDSMTHL DYSPAAGGGA SRRPRAATAT  240
GLGLSGTCET TLYHHNDHRG GGGPGDGGLG GVLSSGTLSG GAGGPGGGGL GDGGGGGGQS  300
REAFQLLHHG SRPTSFNGVA SGSHSPQQLG YSRMGLQHQQ QQQQQQQQQQ LQQAAAVGHG  360
GIVGLDRAAS MPHRTSLPGS TGLLGVPDYG RRVDGAAYDA GPNSGGSAAL GGYAGSQSGY  420
AASQYGQHPS QQQQQLLQMQ AAQQQQQQQL YASNQMQLQQ QGGRYDSGGS AHGGPSRLTH  480
MVLNAGDGSQ HGGLGPRSSQ DLSPHHNQQQ HQAYHYQQQQ QQQLTYAQQQ QQGQQQQPHF  540
EFHQHHQVPP QHQYGGGYIP APQHTQQQQS YGMHPQHPQQ QQQQQQQHRT SINGGMSLMS  600
IDTDTRTGPD GPHYRTNVNA GGGAPVGPDA AAYAEAQYQQ QLLQQQQYYQ QQQQYPPYQQ  660
QPQRPSSGTV SAAGLMSSGG GGGGGGAGVG GFGGGNGGGY DGRPGHSDNG YGDAGSPHGG  720
PDSRITTGGG VGSDGAPGPQ YGASARQSRP SSGPRQEAVV GDDGGGPDGA DAVHTEQQQQ  780
QQARAMAIMA IAAASGSQRG SQRGRAMSGT SNAFDELDAL LEQIDVMEDN EALTLNYLAV  840
AGGSNRGAAA AQHAAAAAGS AGGMDGGHFD LQPQPRYQQQ QQQQEPQQQY LFSGLAPPAQ  900
QQHEHLQDGP SSGAAGHVPG TGMLFGGGAG AGGPGGPGGP GGCGLLGSAT FSALLMNVDG  960
GAAGAGGRGN MAPAGPPPAI AGGPPGGQRT GSMTSQRHHA SMDVVTMGLG DEDIAGMMAA  1020
LAGSRGQGGQ GPAGGVGGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre02.g111200.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001699697.1	0.0	predicted protein
TrEMBL	A0A2K3E2Z9	0.0	A0A2K3E2Z9_CHLRE; Uncharacterized protein
STRING	EDP07393	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9880	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	9e-11	myb domain protein 3r-4

Link Out ? help Back to Top
Phytozome	Cre02.g111200.t1.1