PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre01.g035150.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

C3H

Protein Properties

Length: 399aa MW: 38897.9 Da PI: 9.5925

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre01.g035150.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	103	124	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C +++ +G C++GdrC++ Hg+ Cre01.g035150.t1.1 103 CVRWSNSGSCQFGDRCRYLHGQ 124 99******************97 PP
2	zf-CCCH	41	3.1e-13	177	203	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC f++tGtC+yGd+C FaHg+ Cre01.g035150.t1.1 177 PKTRLCEKFMATGTCRYGDTCIFAHGM 203 79***********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.033	97	125	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0021	99	124	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-7	100	129	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-8	102	130	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-5	103	124	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.544	176	204	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-9	176	208	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.0E-8	176	203	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-10	177	203	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.3E-15	178	208	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MFPNPFFGMG APFGPGMNNM GGMPGQEMAG MPGFPGMPGG TMGPGMPGGN MGGGGGMMGG 60 GPMGGQGHGG GGGGGGGGGE GHRGGMGGGG GRGPGGDKRP GMCVRWSNSG SCQFGDRCRY 120 LHGQGDSRYP PGPSDGGPGG FMGGGGGGGG GGPIRRGGRG GGGDDGPGGR GSRPTGPKTR 180 LCEKFMATGT CRYGDTCIFA HGMEELRPGR DAGGPPPPQP PPQQAQQMQQ QQQQQHQQQH 240 QQQQQQQHRQ QQQDGGNATS PSRGAFGGPS GRPQAQQGGP AAGARGQPPP AAASAPQDAA 300 AATGAQAATA AATAAAPSKP QEVTFVDKVR ALCGVLHIGQ AAALAAEKPL ALTTAAMSLR 360 AGTAYKENPF ADGVERYVAI SAGGGGGGGS AGQGQMQH*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MFPNPFFGMG APFGPGMNNM GGMPGQEMAG MPGFPGMPGG TMGPGMPGGN MGGGGGMMGG  60
GPMGGQGHGG GGGGGGGGGE GHRGGMGGGG GRGPGGDKRP GMCVRWSNSG SCQFGDRCRY  120
LHGQGDSRYP PGPSDGGPGG FMGGGGGGGG GGPIRRGGRG GGGDDGPGGR GSRPTGPKTR  180
LCEKFMATGT CRYGDTCIFA HGMEELRPGR DAGGPPPPQP PPQQAQQMQQ QQQQQHQQQH  240
QQQQQQQHRQ QQQDGGNATS PSRGAFGGPS GRPQAQQGGP AAGARGQPPP AAASAPQDAA  300
AATGAQAATA AATAAAPSKP QEVTFVDKVR ALCGVLHIGQ AAALAAEKPL ALTTAAMSLR  360
AGTAYKENPF ADGVERYVAI SAGGGGGGGS AGQGQMQH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	91	RGGMGGGGGR
2	156	162	GGRGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre01.g035150.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3E703	0.0	A0A2K3E703_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP11265	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	4e-08	C3H family protein

Link Out ? help Back to Top
Phytozome	Cre01.g035150.t1.1