PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre01.g012200.t2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | SBP | ||||||||
Protein Properties | Length: 1376aa MW: 136764 Da PI: 7.0754 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 113.9 | 9e-36 | 920 | 994 | 2 | 76 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 C+v++C++dls++keyh+r+++C++h ka+vvl +g+ qrfCqqC+rfh lsefD +krsCr rL++hn+rrrk+ Cre01.g012200.t2.1 920 CHVDDCNVDLSSLKEYHQRFRICDFHLKAEVVLREGIPQRFCQQCGRFHLLSEFDGTKRSCRARLQRHNARRRKR 994 *************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54695 | 1.57E-17 | 25 | 133 | IPR011333 | SKP1/BTB/POZ domain |
Gene3D | G3DSA:3.30.710.10 | 2.8E-19 | 27 | 134 | No hit | No description |
Pfam | PF00651 | 1.7E-17 | 33 | 134 | IPR000210 | BTB/POZ domain |
PROSITE profile | PS50097 | 13.57 | 39 | 105 | IPR000210 | BTB/POZ domain |
SMART | SM00225 | 4.2E-13 | 40 | 135 | IPR000210 | BTB/POZ domain |
Gene3D | G3DSA:4.10.1100.10 | 2.4E-31 | 913 | 981 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.368 | 917 | 994 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-32 | 918 | 996 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-30 | 920 | 993 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1376 aa Download sequence Send to blast |
MALPPDPEAG GAQAFVYRDA SARGMYAGLA PHFNDRRLSD IVILRPDGRS IYAHQVVLAA 60 CSRKFSNVFG HGEATGKELP IQGVDSEALE LVLSSFYRGE CKLTPTTVVP IYDVCLKLEV 120 PGLTSACEQF LQRSMGPDTC CMYLEAALAV LLEHTVKMCL SYAKDRFEEI AAAPSFLRLS 180 TKSVRLLLTS TRNSGSGIND ISLARALARW AVSKPDHLSE CESIFKELNV TTTALLQLLQ 240 SADFVHALQG QQKPGTGQGS TAAAGGGGGG SGGAGGGGST TGRQPPPPLP RQQQQQAGLA 300 APSAAPQQQQ LQQQQIGAGH GREGDRGTFG YAPDANSRDA REGAAGGGGM GNGRLGGASG 360 SPAHVAGAHM QQGQAAGTGG PPPPHAGGHS AQQQLRNSPM LASGGSGSRA AERGGPTDYG 420 EGPPGGMRPP AAAAGTTAER GDRYDRTGWY SGGGSGAGRG LAGQAGPPGS GLTAGRPGGG 480 RSSPPPPFGR QSHLVEHAAG AGAGSERVGG IDGGPFQRRS LPSELLAGGP GIGGGGGDDD 540 RQAYARRYGG GSDRAAPDSE LAGAAATTRG GGGGGGGSGG GGGGERDNLV AVPLPVLEQL 600 GLTVRLTSSG ALAATGGPLG SKQVPLSVSG SGRSGPLMAM LPAGLVKYLQ QVGSGGPMPY 660 EAGGGSGRSG AGGAAAGRLD DGSPPLPPGL LPPQQHQQQP RAYGSADRAL DRNGGSGLSP 720 HAAGPSGRGG AGLGPHQRSS LDMLSTVAAS AEEEAGFVDI PGLPRLGQTG GGRLMAPRSA 780 SLGLGGLATE VGASGGRSGR FDLLGLGGLA PHLTADGGVA GRWSVPGAIA GTSGSLLPLG 840 GSLGGPGDLL GGGLNGGSRA PLGGMSKRQR PSPEDLDPDH EEPGLGLGGA GGGRGGGLTP 900 GGGARARGGG GYGSKGPLLC HVDDCNVDLS SLKEYHQRFR ICDFHLKAEV VLREGIPQRF 960 CQQCGRFHLL SEFDGTKRSC RARLQRHNAR RRKRPDQRGD SDDVPRRRPV YQTMRQPPYL 1020 SAGVAAGNMA LAAAAAAAAG VGAPLSGGDA GGLHIPDLTS LPPAGSSGDG PHAQLPLDLQ 1080 QLLAQQHTLP TGGVAGWPDG WPGGGGTADD ADGDGDYDAE DNGGPSGDDA AMEGTPEDGD 1140 NRFTPQQLQQ QQQAGAMRGG GSAAAGSGIR SQIIRDILMQ AEERQQSEQQ QRQQAAGQGQ 1200 GQQNAAPPAA ASGARASLLD LAMAVRAQEG EARPPDAAGG TAGGGRTPKQ GVDMDQQQSA 1260 GAARGAGLDG RSGAAGEAAD TDGVPPATAT AGGGGASNVG DGNSPRRPQQ PSTAAMPQPP 1320 PQAPSPPPAV KIKLEPTTSA DVADGARMPA DAAATATSAA GDDTRAAAAA AGGGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-26 | 910 | 993 | 1 | 84 | squamosa promoter binding protein-like 4 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00060 | PBM | Transfer from AT3G60030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre01.g012200.t2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3E5L7 | 0.0 | A0A2K3E5L7_CHLRE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-20 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Cre01.g012200.t2.1 |