PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre01.g004600.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 3177aa MW: 318711 Da PI: 9.3928

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre01.g004600.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.1	8.6e-19	9	54	7	52
RWP-RK 7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 le+l++ F+l+ +dA+ +L+++++ LK+iCRq+GI+RWPhRk++sl Cre01.g004600.t1.1 9 LEQLRELFHLSARDACITLNISQSRLKKICRQHGISRWPHRKLASL 54 689****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.516	1	74	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-18	9	54	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 3177 aa Download sequence Send to blast
MATVGEPPLE QLRELFHLSA RDACITLNIS QSRLKKICRQ HGISRWPHRK LASLDSLRQQ 60 LKGDSGLTTQ DRAVLLARLE AQVAAVIAEP DRPLEKLFED MRQTSYKVRY HARNKLRRGT 120 GAAGEGADDG DAAGTASGGD ASSPAGRALS TERGGGRRGR RGAASPRRGP QRRAASSGPA 180 SGSRLRRAGR RRGSDWGGSS GEEEAASDST EAASDDEEQA AGGAAAGGYS ERDDDEDDEG 240 DDGEDSDEDD EDDEEDEDWV AGGRAGKAGG RQARADMAAA ATAGGSAGRA DRLRRRATGL 300 QGLRVPAAAS PATPRSRRRR RSAAPLDSGD TEPSPGGRSA AAAAPLATTA CGGGDTNSSD 360 SAGRSLEQRQ PAAREGAGDA AGRPPTAPQP QLSGRSRTVA SRSASARAGA PAGLPGFSPV 420 RDAATPSSHT GPAAASRGRL HSGGHGHGHA HGRAAKPERG GAAATLSAFA AAERAVAGAS 480 AAGAAGGGGG GGGGGGSAVK QEREQSAGQL VGPGGGGGVA GAAGRGADGA AARDDARAAA 540 GDVAVEAGAG TGGSSQLDGS SQWGMKRARS APQPQPLGAA GVAGTTSSHQ TTSSDRSQHQ 600 QQQAPLPPLQ ARTSREWPPM DMMPSGWQQP YRQPMPLDAT RTTPATATTA TTAAGGGADV 660 GSGRHQDRRL DHPSHLQQAP QHPHPQEPLH QRAQRPASSP TASMGGPATK QQAHGSYGAA 720 APLHHTAAQS HSHSYSHAPP TATTAPPAEP HPFFSPAAAA AAAAAAGPGI ESSLGLGSSV 780 PRSGALEHGV EDWEWRWREE GQQRHQRALL QQQQQQQEYM PPAPHHHMPH EQQQRHQQLL 840 QSQSQSQSQS QSQPQSQQQR HDLHREQLPP LPPQPEALSR QQQEQRQQEH FELQQLQLLQ 900 QQQQSQQLQQ PQQHLMPSSS SFQRDWIPPP QPDPQPLPSW RQSEPLHAEP QPRASRSQQQ 960 PQQLQSPGHV QQGQPLQHGG ASGSAPTYRG GGFGSELDGG WHWQQQQQQQ QQQQQLLQQQ 1020 QAASLSHQLQ EREQQELQRQ QAQARHHMQL QQQQQGAPPS SSWHGQYPPL HQRPDQAHAQ 1080 YPHLQQPQEH QHPQQERYPP LHQQTQQQLQ QQQQQPQLQQ QQQAQWPGAD PRLLAPGRQP 1140 LPPPPSWSAR QGPGSAPPST SAGHPTLQQQ LYPPMYQQQT QQQPQPQQQN AGQQPAYHHH 1200 PLLSPHSPQY QQRMQASAPV GSGGAHRQSQ SIIPGPPSAL LSLPSPASNE PSPRDFAYPS 1260 PLPPHHQPPH QPHPHHHSLS GSGFDSEGGA DAAAAARRPS NQSQSFDQQH QAAAIASGTL 1320 RNWSSSSSAS SLLVWGSAWP PGSGLGGMGP GGMGPGGVGS GGMGPGPLGP GGSNPHGAAG 1380 SGGGSAYGAA GFRSGLHSGG GVGGAGGAGF GGSAGGGYGW SSGGSSYSGG GFAHAMGLPS 1440 SGGGAAAASG TGGDGGGGDE NRMLHEGLRG RSAYVSDAGD RRDEAVAEAA AAAAATVAAG 1500 PGGGRMGGRD AAGTRGGGGG TGSGAATTAA VAAAAAAAAA VAAVAATSGA ADHETRHRSP 1560 ALQPPTHHGA PTDLLSSRHH ARHSHVLPPA GMNYAAYLPP PLSLPPALDS PHQPPYSASH 1620 GPAHGRLNPA AYSRVVSTGF PGIHPGSLPG SSSPSPSGGG GGGGANAGGG RVGGGSGTAA 1680 RRRGGDRAAS PLGSYGSGAA GGGGGIAAGV KAEDRGPSGG SGGDGGFGGD DTRDVEPHLG 1740 HVAFHGGNAG QQQTAAYRRT SAPAAAAAAT ADPRAQSASG ERDSGGGVAV DLRRVPYTGR 1800 LSEPVMRAPL RALLGLGSDL ADEGEGEAEL AASMAAAARD EERFRMLSTG SSTVAIFAPE 1860 AQPQPHQQTQ HQQPHQPSRP VEGRPHHGYG LPRLQQGAPE GRVASASAAD RGGRRTSGDM 1920 ERGGNGGRRP HTVPDARGWA GPADLLLACQ ETDAIAQAEA ADGVRGAVGH LHQATYQAAA 1980 SLHVAQQPRG GAAYEEPPPR RQPHQAAGAG GPSPVCSADL TTPTAAHQRP QQLRPHAAAP 2040 PSATSSRHQV SRRAAAAEAA VVTATPVAAT GSSGRPGPAA GPSPAAAPVT AAAASGAAFL 2100 SPVASVAAGS GVAGGPATSS ASSGRRSSGG GSSSSGGRTL LVWTGSQPRW GQVLPPLQHQ 2160 SQPQQQQPQQ QQQPQQQPEL QSPSMRPPQL QPLPLMPSSA PLRTGPQRRI SGAGAAGAEV 2220 TTGTATASGP GQESTSAAAA GAAGALPPMP PLPASLLAAL AAGGGAGGDL SPDAYPVTAL 2280 QPPAVGAADR GTDAGQREQD RPQGRRASPP PAATDPANAT TAGGVPLSIL EYLRHGSGSE 2340 PPLDLEALED LDMDLDLDFQ TPQAGDAAAA LALMRPWLTS TPGLGPTPME ISPRAALPAT 2400 RRISAAGTEA PAPQRQQAPP ATGQPTCEDA AGSTAAGGGT AAAPAARMTS AGQAAASTAL 2460 SLSASAAGPS RPPHATCAAA DATTFASPVA AAAADAARQH EFASPAPHAA AATAAAPAAV 2520 SPCTPAAAVI PGSGAGGAAG AGAPASPPPA PVKRPPPARL FLHTVRRHSG TGEGPAAEPT 2580 AARAHAPAAH AEGGGMDAPP LPHHQSQQQH QSQQHPQHHH QQASPYGGAA AHMYAAWCSS 2640 PAATPTRHNA SGGGAAAAAA GSTGGAAFAA APAPPQAPRA AAAADADTRS VSVTGGLGGS 2700 GSGGSAHGGG TGGLGGVSPR SRAALLVDVA EPLGPYGPQQ PTTATSTAAA AVAAGEAGGA 2760 SGRQLQPAPA PPTAASRYPW NMGWGAGASG AAGRENTPLR QLPPFPPPQP ELAALPLHRA 2820 QATGTVATGT AGPGEQGPQG YQQRSGGGDT TEAHVPPPLL QPPPRATSPT GYAVASYRRD 2880 SEGGGVIPVV SPPPQLMPQS VRPPPRLAPL VAPTAAAGPP QPPPLTSPPA PRKPAKQPAL 2940 MAPGPPAGQR RSSGGSVDTG GSAGGAAGRN SPASLAGAGT GAAGPLPKLP PHVLERPLPP 3000 RMQVHMPAPA PSPAAVQGPV GATAHSGAAA PGSRLLAAAM SPVGGTNAGG AAAGASPPPL 3060 LKVTIGGRPG SLQSAIGSFS VQPTQLPQPP QLPALPQSQH QSQRQHQVAE QGRFGMPGAA 3120 GWAVPGAAVG AAGSHLPQLH QHQHAAAGIL DGDTQSAGGT GGGGVSSKRK REGDSE*

Sequence ? help Back to Top

Protein Sequence Length: 3177 aa Download sequence Send to blast

MATVGEPPLE QLRELFHLSA RDACITLNIS QSRLKKICRQ HGISRWPHRK LASLDSLRQQ  60
LKGDSGLTTQ DRAVLLARLE AQVAAVIAEP DRPLEKLFED MRQTSYKVRY HARNKLRRGT  120
GAAGEGADDG DAAGTASGGD ASSPAGRALS TERGGGRRGR RGAASPRRGP QRRAASSGPA  180
SGSRLRRAGR RRGSDWGGSS GEEEAASDST EAASDDEEQA AGGAAAGGYS ERDDDEDDEG  240
DDGEDSDEDD EDDEEDEDWV AGGRAGKAGG RQARADMAAA ATAGGSAGRA DRLRRRATGL  300
QGLRVPAAAS PATPRSRRRR RSAAPLDSGD TEPSPGGRSA AAAAPLATTA CGGGDTNSSD  360
SAGRSLEQRQ PAAREGAGDA AGRPPTAPQP QLSGRSRTVA SRSASARAGA PAGLPGFSPV  420
RDAATPSSHT GPAAASRGRL HSGGHGHGHA HGRAAKPERG GAAATLSAFA AAERAVAGAS  480
AAGAAGGGGG GGGGGGSAVK QEREQSAGQL VGPGGGGGVA GAAGRGADGA AARDDARAAA  540
GDVAVEAGAG TGGSSQLDGS SQWGMKRARS APQPQPLGAA GVAGTTSSHQ TTSSDRSQHQ  600
QQQAPLPPLQ ARTSREWPPM DMMPSGWQQP YRQPMPLDAT RTTPATATTA TTAAGGGADV  660
GSGRHQDRRL DHPSHLQQAP QHPHPQEPLH QRAQRPASSP TASMGGPATK QQAHGSYGAA  720
APLHHTAAQS HSHSYSHAPP TATTAPPAEP HPFFSPAAAA AAAAAAGPGI ESSLGLGSSV  780
PRSGALEHGV EDWEWRWREE GQQRHQRALL QQQQQQQEYM PPAPHHHMPH EQQQRHQQLL  840
QSQSQSQSQS QSQPQSQQQR HDLHREQLPP LPPQPEALSR QQQEQRQQEH FELQQLQLLQ  900
QQQQSQQLQQ PQQHLMPSSS SFQRDWIPPP QPDPQPLPSW RQSEPLHAEP QPRASRSQQQ  960
PQQLQSPGHV QQGQPLQHGG ASGSAPTYRG GGFGSELDGG WHWQQQQQQQ QQQQQLLQQQ  1020
QAASLSHQLQ EREQQELQRQ QAQARHHMQL QQQQQGAPPS SSWHGQYPPL HQRPDQAHAQ  1080
YPHLQQPQEH QHPQQERYPP LHQQTQQQLQ QQQQQPQLQQ QQQAQWPGAD PRLLAPGRQP  1140
LPPPPSWSAR QGPGSAPPST SAGHPTLQQQ LYPPMYQQQT QQQPQPQQQN AGQQPAYHHH  1200
PLLSPHSPQY QQRMQASAPV GSGGAHRQSQ SIIPGPPSAL LSLPSPASNE PSPRDFAYPS  1260
PLPPHHQPPH QPHPHHHSLS GSGFDSEGGA DAAAAARRPS NQSQSFDQQH QAAAIASGTL  1320
RNWSSSSSAS SLLVWGSAWP PGSGLGGMGP GGMGPGGVGS GGMGPGPLGP GGSNPHGAAG  1380
SGGGSAYGAA GFRSGLHSGG GVGGAGGAGF GGSAGGGYGW SSGGSSYSGG GFAHAMGLPS  1440
SGGGAAAASG TGGDGGGGDE NRMLHEGLRG RSAYVSDAGD RRDEAVAEAA AAAAATVAAG  1500
PGGGRMGGRD AAGTRGGGGG TGSGAATTAA VAAAAAAAAA VAAVAATSGA ADHETRHRSP  1560
ALQPPTHHGA PTDLLSSRHH ARHSHVLPPA GMNYAAYLPP PLSLPPALDS PHQPPYSASH  1620
GPAHGRLNPA AYSRVVSTGF PGIHPGSLPG SSSPSPSGGG GGGGANAGGG RVGGGSGTAA  1680
RRRGGDRAAS PLGSYGSGAA GGGGGIAAGV KAEDRGPSGG SGGDGGFGGD DTRDVEPHLG  1740
HVAFHGGNAG QQQTAAYRRT SAPAAAAAAT ADPRAQSASG ERDSGGGVAV DLRRVPYTGR  1800
LSEPVMRAPL RALLGLGSDL ADEGEGEAEL AASMAAAARD EERFRMLSTG SSTVAIFAPE  1860
AQPQPHQQTQ HQQPHQPSRP VEGRPHHGYG LPRLQQGAPE GRVASASAAD RGGRRTSGDM  1920
ERGGNGGRRP HTVPDARGWA GPADLLLACQ ETDAIAQAEA ADGVRGAVGH LHQATYQAAA  1980
SLHVAQQPRG GAAYEEPPPR RQPHQAAGAG GPSPVCSADL TTPTAAHQRP QQLRPHAAAP  2040
PSATSSRHQV SRRAAAAEAA VVTATPVAAT GSSGRPGPAA GPSPAAAPVT AAAASGAAFL  2100
SPVASVAAGS GVAGGPATSS ASSGRRSSGG GSSSSGGRTL LVWTGSQPRW GQVLPPLQHQ  2160
SQPQQQQPQQ QQQPQQQPEL QSPSMRPPQL QPLPLMPSSA PLRTGPQRRI SGAGAAGAEV  2220
TTGTATASGP GQESTSAAAA GAAGALPPMP PLPASLLAAL AAGGGAGGDL SPDAYPVTAL  2280
QPPAVGAADR GTDAGQREQD RPQGRRASPP PAATDPANAT TAGGVPLSIL EYLRHGSGSE  2340
PPLDLEALED LDMDLDLDFQ TPQAGDAAAA LALMRPWLTS TPGLGPTPME ISPRAALPAT  2400
RRISAAGTEA PAPQRQQAPP ATGQPTCEDA AGSTAAGGGT AAAPAARMTS AGQAAASTAL  2460
SLSASAAGPS RPPHATCAAA DATTFASPVA AAAADAARQH EFASPAPHAA AATAAAPAAV  2520
SPCTPAAAVI PGSGAGGAAG AGAPASPPPA PVKRPPPARL FLHTVRRHSG TGEGPAAEPT  2580
AARAHAPAAH AEGGGMDAPP LPHHQSQQQH QSQQHPQHHH QQASPYGGAA AHMYAAWCSS  2640
PAATPTRHNA SGGGAAAAAA GSTGGAAFAA APAPPQAPRA AAAADADTRS VSVTGGLGGS  2700
GSGGSAHGGG TGGLGGVSPR SRAALLVDVA EPLGPYGPQQ PTTATSTAAA AVAAGEAGGA  2760
SGRQLQPAPA PPTAASRYPW NMGWGAGASG AAGRENTPLR QLPPFPPPQP ELAALPLHRA  2820
QATGTVATGT AGPGEQGPQG YQQRSGGGDT TEAHVPPPLL QPPPRATSPT GYAVASYRRD  2880
SEGGGVIPVV SPPPQLMPQS VRPPPRLAPL VAPTAAAGPP QPPPLTSPPA PRKPAKQPAL  2940
MAPGPPAGQR RSSGGSVDTG GSAGGAAGRN SPASLAGAGT GAAGPLPKLP PHVLERPLPP  3000
RMQVHMPAPA PSPAAVQGPV GATAHSGAAA PGSRLLAAAM SPVGGTNAGG AAAGASPPPL  3060
LKVTIGGRPG SLQSAIGSFS VQPTQLPQPP QLPALPQSQH QSQRQHQVAE QGRFGMPGAA  3120
GWAVPGAAVG AAGSHLPQLH QHQHAAAGIL DGDTQSAGGT GGGGVSSKRK REGDSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	295	DRLRRR
2	1668	1674	GGRVGGG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Cre.12558	0.0	normal conditions

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre01.g004600.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001702133.1	0.0	RWP-RK transcription factor
TrEMBL	A0A2K3E4Z7	0.0	A0A2K3E4Z7_CHLRE; Uncharacterized protein
STRING	EDO97222	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-11	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cre01.g004600.t1.1