PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_94.62
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 423aa    MW: 46807 Da    PI: 9.3639
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_94.62genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.71.8e-2949139366
                          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................... 65 
                                  g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k  i++l+ +                   
  evm.model.supercontig_94.62  49 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLDATKNDIDKLPPLqfppgfgqfhhqmflphhe 130
                                  78*************************************************************4444444333333333333 PP

                          TCP  66 ........s 66 
                                          s
  evm.model.supercontig_94.62 131 lspsinsiS 139
                                  332222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2750185IPR005333Transcription factor, TCP
PROSITE profilePS5136929.95150108IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MISSSRERGL EAKQENDMSK IDKSKIASSS RQWSAFRNPR IVRVSRTFGG KDRHSKVCTV  60
RGLRDRRIRL SVPTAIQLYD LQDRLGLNQP SKVIDWLLDA TKNDIDKLPP LQFPPGFGQF  120
HHQMFLPHHE LSPSINSISQ SLPFASFFDA NHSNPSNFLK DGMSGLHSSL GIKTNSVGDG  180
DHDDHHQSIN MAKVKPYWDM DYANNSFRTA AKCKEVDNHQ NNTPSAAGKG KWIKSSVVQN  240
RDQDNQDHGP ISGGYLPSSS AQKFFPLANH CYLNNPMPFN SYYHYNWDPS SSLSLSQFGG  300
HGYQPQLDQS NNNSLNDAAV TLATPPSSSL SLSSTPSHSQ LLFCPPPQLP PSFPSYPTPY  360
LTTPAAPESS DQARQINHLQ MLTSNNSLKL SSSAMKVPFQ LNVNYSAGDM QNHNKGSPSR  420
QG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1855109155Putative transcription factor PCF6
5zkt_B1e-1855109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_94.62
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893271.10.0transcription factor TCP5-like
TrEMBLA0A1Q3C4421e-117A0A1Q3C442_CEPFO; TCP domain-containing protein
STRINGevm.model.supercontig_94.620.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5