PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_94.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 180aa MW: 21161.1 Da PI: 7.5775 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102 | 8.2e-32 | 21 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrF Ptdeelv++yL +kv + + ++ + i+ +d+y+ P++L+ ++++++ke++fF+++++k+ +gk+++r++ evm.model.supercontig_94.23 21 LPPGFRFLPTDEELVTHYLMNKVFNYRpIPSFILfeIDACDLYSKPPKNLE-QFSSGQKEIFFFIHEERKNVEGKNNKRMVG 101 79********************988877555443359*************8.788899*********************876 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+W+ +g ++++++g + k L+++++++++++kt+W m+ey+l evm.model.supercontig_94.23 102 dgTGFWQLSGDRIPICNSHGYVFAFKIHLIYFSANKSTPKKTHWRMDEYHL 152 45789********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-33 | 16 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.298 | 21 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-16 | 22 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MERCQKEEEK YGSEEKMFIS LPPGFRFLPT DEELVTHYLM NKVFNYRPIP SFILFEIDAC 60 DLYSKPPKNL EQFSSGQKEI FFFIHEERKN VEGKNNKRMV GDGTGFWQLS GDRIPICNSH 120 GYVFAFKIHL IYFSANKSTP KKTHWRMDEY HLCLDQETSK GEKWVVGRVK RGTDYESHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-18 | 19 | 152 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_94.23 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651384.1 | 1e-49 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A251PB64 | 5e-48 | A0A251PB64_PRUPE; Uncharacterized protein | ||||
STRING | evm.model.supercontig_94.23 | 1e-133 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21880 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 4e-23 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_94.23 |