PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.92
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 281aa    MW: 30592.3 Da    PI: 7.2494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.92genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073118140123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  y+C+ C+++F++   L  H  +H
  evm.model.supercontig_92.92 118 YQCKTCDRCFPSFQALGGHRASH 140
                                  9***********99999998887 PP
2zf-C2H213.90.00017186208123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  ++C++Cg  Fs+   L  H+r+H
  evm.model.supercontig_92.92 186 HECSICGAEFSSGQALGGHMRRH 208
                                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.82E-8117140No hitNo description
PfamPF139121.2E-10117142IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307118145IPR007087Zinc finger, C2H2
SMARTSM003550.077118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576678.82E-8181208No hitNo description
Gene3DG3DSA:3.30.160.600.001184208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.9E-13185209IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743186208IPR007087Zinc finger, C2H2
SMARTSM003550.01186208IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEAQDEVIGC SSTDQTQVIK GKRTKRPRPT SPLNVTASSL AQNPRLINDD PRDLDRLTLS  60
SPDHDEFTHS DDTTEEEQDM ANCLILLAQG RRRPIISSSV AEFSLATKSP PATGLYVYQC  120
KTCDRCFPSF QALGGHRASH KKPAKTHCND EKMVVVMQAD GFVNNTSNSL SLQIANREAA  180
KSNKVHECSI CGAEFSSGQA LGGHMRRHRI AATTTTTTSS SATGFGNIHS PESKKPRNVL  240
ELDLNLPAPE VDQLDQPKFA FSSKEQILVF SPPPLVGCHY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12428KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.92
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893394.10.0zinc finger protein ZAT5-like
TrEMBLA0A061ET065e-86A0A061ET06_THECC; Nucleic acid binding protein, putative
STRINGevm.model.supercontig_92.920.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.17e-56C2H2 family protein