PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.23
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 527aa    MW: 57532.7 Da    PI: 6.812
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.23genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07242262526
                                  --SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                  +C++f++ G C++Gd C +aHg
  evm.model.supercontig_92.23 242 PCPDFRK-GACRRGDMCEYAHG 262
                                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.4E-936133IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.31E-941133IPR020683Ankyrin repeat-containing domain
CDDcd002041.50E-785133No hitNo description
PROSITE profilePS502979.70286133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.006386116IPR002110Ankyrin repeat
PfamPF136371.2E-687133No hitNo description
SMARTSM003564.0E-6237263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4240264IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5242262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582242264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4270300IPR000571Zinc finger, CCCH-type
SMARTSM0035665272295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MCVGPERLKG APTPTLLNSF EDSRPTNIDM NHLTVETEDT FASLLELAAN NDVEGFRQSI  60
QHDPSGIDEV GLWYGRQKGT KQMVNEERTP LMVAATYGSI DVIRLILSSS DADVNHCCGL  120
DKSTALHCAA SGGAPLQISF SPPLSPSMEN GSPLSALESP RKAKPNNGTL SSISEKKEYP  180
VDPTLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC  240
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCARRVCF FAHTAEELRP  300
LYVSTGSAVP SPRSSTSSAM DFAAAMSLLP GSPSSVNVMP PSPFTPPMSP SANGMSHSNV  360
GWPQPNVPAL HLPGTNVQSS RLRAALNARD IPAEDFNMLP DFDVQQPQII SDLSSISQPS  420
LGSNSLNRSG RMKALTPSNL DDLFSAESLS PRFSDQALAS AVFSPTHKSA VLNQFQQQQS  480
MFSPINTGIF WGSIIWQDVS TKRGTHLTHE FSGIHVCSTR EAATVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.23
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526718.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_015579394.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_015579395.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1R3HMY80.0A0A1R3HMY8_9ROSI; Zinc finger, CCCH-type
STRINGevm.model.supercontig_92.230.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]