PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.17
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 680aa    MW: 76279.2 Da    PI: 5.418
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.17genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07617670246
                                  SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
              Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                                   +WT+eE++ l ++v+++ g+      W++I +         Rt+ ++k++w++
  evm.model.supercontig_92.17 617 CPWTAEEEDMLRKGVQLFSGDnerqfPWTKILEFGAsvfqSSRTPVDLKDKWRN 670
                                  69*****************************9876689999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.2E-6368430IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579039.75E-8371435IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002493.1E-5381426IPR001965Zinc finger, PHD-type
PROSITE patternPS013590382425IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.5E-10611677IPR009057Homeodomain-like
PROSITE profilePS512949.665611676IPR017930Myb domain
SuperFamilySSF466895.61E-11613673IPR009057Homeodomain-like
SMARTSM007171.1E-5615674IPR001005SANT/Myb domain
CDDcd116601.30E-13618673No hitNo description
PfamPF139211.9E-6619675No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVPEFSDDLG KNAREMVALR SLEELFGVSD GLTKGSDAPE TKAEFDLSAS CEDMLQHILQ  60
ETSLSDIQVG GLKHLKLDVS SFLTHKKACM PKCALEQLKD ATAEGFEPFA ASLKRTSGIT  120
CISGHQKRRL NKSGNASQII AGEKNLVPLS RENGNELSRD YLCNRNLLPS KRDRSNLSPE  180
KFAGQCLGIK DSAIDGDILH LNSKKNKQDA ICTNQPVEQI LASLHEAKSL EHNTEGTVRV  240
IKGKGSDLAE DYQAGGVEDK KFPESGHGTD TVMDRIRHSI VNDDQFQNNQ MEINHNAPES  300
IQVTCGDEPV CNMILVEVND SELRTSDSIL PATGQNEEIS SDNSEFNNEM IDFEMKKSQF  360
LSSQCPLNDE SSKIYWTERN LCVKCNEDGH LLVCTISTCP FMVHETCLGS SAILGDNETF  420
LCPFCAYSVA VSKYLKAKKE ASLARKALVA FLNVGFEHRL KEYGERLRRE EQFHLRKNGN  480
EAPSYKLPEN GHLEDGEDNQ VGQNCQDVNE ISGSQQNKST GQRDQEPAFS EEEDDTYCKN  540
SKNFPLNKKD VKNKIGKDFL QQQDTLKKPI YDCNTDEEEA SEGDSSKHIN SDYCIRFRRQ  600
EKQRSYPAIP QSRRKKCPWT AEEEDMLRKG VQLFSGDNER QFPWTKILEF GASVFQSSRT  660
PVDLKDKWRN MCRGKSKSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174LPSKRDRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.17
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893309.10.0uncharacterized protein LOC110811202 isoform X2
STRINGevm.model.supercontig_92.170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1434755
Representative plantOGRP1443713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-06MYB_related family protein