PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_90.64

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C3H

Protein Properties

Length: 314aa MW: 32406.5 Da PI: 7.373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_90.64	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.7	2.7e-10	98	122	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ evm.model.supercontig_90.64 98 FKTKLCCKFRA-GTCPYVTNCNFAHS 122 69*******.***********8 PP
2	zf-CCCH	18.8	2.9e-06	179	204	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ evm.model.supercontig_90.64 179 YKGRHCKKFYTEEGCPYGDNCTFLHD 204 78888********************7 PP
3	zf-CCCH	42.3	1.3e-13	280	305	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg evm.model.supercontig_90.64 280 WKTRICNKWEITGYCPFGNKCHFAHG 305 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.8E-14	95	130	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.18E-8	95	128	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.868	97	124	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0015	97	123	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-7	98	122	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.23	178	206	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-9	178	206	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.3E-7	178	206	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.058	178	205	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-16	273	308	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.68E-10	276	306	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-8	279	306	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.225	279	307	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.5E-11	280	305	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDCGRDSGGN VVHVITGNMP AENWIPNPND QVWATEEDYR VWTNPEASND NGSSSNYDQR 60 PSQTRSGSEQ PPSKKNRNSQ EANSSTSNRA KAIGKMFFKT KLCCKFRAGT CPYVTNCNFA 120 HSVEELRRPP ANWQEIVAAH EEEKAAAAAA GNPVAEPREE FQIPSLGSSA FGGEMGRSYK 180 GRHCKKFYTE EGCPYGDNCT FLHDEQSKNR ESVAISLGPG GYGGSAGSGS GAAVATAAAG 240 AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AAQNVKPSNW KTRICNKWEI TGYCPFGNKC 300 HFAHGAADSL AML*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_90.64

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893571.1	0.0	zinc finger CCCH domain-containing protein 12-like isoform X2
Swissprot	Q9LQM3	1e-103	C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBL	A0A1R3I420	1e-130	A0A1R3I420_COCAP; Zinc finger, CCCH-type
STRING	evm.model.supercontig_90.64	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4003	27	58
Representative plant	OGRP2045	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	4e-76	C3H family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_90.64