PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_90.22
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 363aa    MW: 40045.3 Da    PI: 7.614
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_90.22genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-062850427
                                 ---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                                 + C+f++  G C yGdrC+ +H+p
  evm.model.supercontig_90.22 28 KVCSFWLS-GRCVYGDRCRNHHPP 50
                                 68*****9.**********99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1032451IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-52550IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-52548IPR000571Zinc finger, CCCH-type
SMARTSM003206.0E-75796IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.105.3E-1159116IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.47E-4560105IPR017986WD40-repeat-containing domain
PfamPF004003.5E-76096IPR001680WD40 repeat
PROSITE profilePS5008213.95164105IPR001680WD40 repeat
PROSITE profilePS5029419.56564268IPR017986WD40-repeat-containing domain
PRINTSPR003204.3E-78397IPR020472G-protein beta WD-40 repeat
PROSITE patternPS0067808397IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.106.4E-34130359IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003205.4134172IPR001680WD40 repeat
SuperFamilySSF509782.47E-45141350IPR017986WD40-repeat-containing domain
SMARTSM003202.2E-7182219IPR001680WD40 repeat
PfamPF004004.8E-7184219IPR001680WD40 repeat
PROSITE profilePS5008212.313189228IPR001680WD40 repeat
PROSITE patternPS006780206220IPR019775WD40 repeat, conserved site
PRINTSPR003204.3E-7206220IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0012222259IPR001680WD40 repeat
PfamPF004000.0032225258IPR001680WD40 repeat
PROSITE profilePS500829.105229258IPR001680WD40 repeat
PRINTSPR003204.3E-7246260IPR020472G-protein beta WD-40 repeat
SMARTSM00320120262306IPR001680WD40 repeat
SMARTSM003206309346IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAAPNVWRRT VETPFKNVVK NKPPPSKKVC SFWLSGRCVY GDRCRNHHPP FLNTDGHLSL  60
LGRLNGHKGD ICGICLPTDS DKLLTGYRDG TVRIWDCNSG KCVSVLNLQN QIGSMHCEGS  120
WIFYGLPNLL QARKDNEVYE LDGPVGQVYA ITSARSDTVF AGAQNGDILV WRGFPSPPNS  180
NPFRLIGTLK GHTTPVTCLT VGGGKLYSGS MDGTVRVWDT ESFVCINTVE AHSDCITSLV  240
YWGVYLITSS RDKSIKIWAT IHEEGLQEAY THQERHSILA LHGMNDANNK PVICCSCEDS  300
SVRIYELPSF MERGRLLSKR NVHSIQSCPY NLFFTGDGAG TVTVWNWLED PQPQGINGSS  360
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-17613468321Tako8
6g6n_A5e-17613468321Tako8
6g6n_B5e-17613468321Tako8
6g6n_C5e-17613468321Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_90.22
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893583.10.0zinc finger CCCH domain-containing protein 48-like
TrEMBLA0A251QDW71e-113A0A251QDW7_PRUPE; Uncharacterized protein
STRINGevm.model.supercontig_90.220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-99C3H family protein