PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_86.65 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 178aa MW: 20110.6 Da PI: 7.2173 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77.1 | 2.1e-24 | 13 | 73 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK++ ++++prsY+rCt++ +C+++k+v++ ++dp + +tY g+H+++ evm.model.supercontig_86.65 13 ADGFAWRKYGQKDILKANHPRSYFRCTHKndqKCQATKQVQKIRDDPPLYRTTYYGHHTCK 73 7***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.347 | 7 | 70 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-24 | 8 | 73 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-26 | 8 | 74 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 12 | 74 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.9E-25 | 14 | 73 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MLEPVPQTVT LVADGFAWRK YGQKDILKAN HPRSYFRCTH KNDQKCQATK QVQKIRDDPP 60 LYRTTYYGHH TCKNLVNANH LVNESIQLGF SIINDSTKQD HTPFSISFPS SSSLKNECKQ 120 EVLTTNNQLS SSLSKYLLSP DLTTFESCKA STHHSLEMGV MEESVSVGFD DVFPFEF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-23 | 8 | 73 | 4 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_86.65 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893837.1 | 1e-126 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A061EIE6 | 9e-45 | A0A061EIE6_THECC; WRKY DNA-binding protein 70, putative isoform 1 | ||||
STRING | evm.model.supercontig_86.65 | 1e-131 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16719 | 10 | 12 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22570.1 | 2e-26 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_86.65 |