PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_85.76
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 687aa    MW: 75337 Da    PI: 9.7627
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_85.76genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-111062147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                                 ++ W t+E++ll++av+++G ++W+++a +++        +t+ +ck ++ ++
  evm.model.supercontig_85.76 10 KQTWGTWEELLLACAVHRYGADSWDSVAMEVQkrsstlSSLTPLSCKQKYIDL 62
                                 789*****************************999999999******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-6965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-4960IPR009057Homeodomain-like
SuperFamilySSF466891.88E-51066IPR009057Homeodomain-like
PfamPF002492.8E-111062IPR001005SANT/Myb domain
CDDcd001674.75E-61259No hitNo description
Gene3DG3DSA:1.20.920.104.8E-14302432IPR001487Bromodomain
SMARTSM002971.5E-12306415IPR001487Bromodomain
SuperFamilySSF473702.09E-15312410IPR001487Bromodomain
CDDcd043691.44E-14317410No hitNo description
PfamPF004395.7E-9323399IPR001487Bromodomain
PROSITE profilePS5001412.112325396IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAKPDNVSEK QTWGTWEELL LACAVHRYGA DSWDSVAMEV QKRSSTLSSL TPLSCKQKYI  60
DLRSRFARND NAPIGDDDKA TTEIGNVPWL EELRQLRVAE LRREVERYDL SIVSLQLKVK  120
SLEEERERSL REKEKGTERS DLEKAVELSN EEKKEIDCPP ETVAGEVVSG AESDPENRSM  180
NASNSTDPKG KKRGTGQEEA EKGREPVDPV KEPSRTAGNG GILGEDSYNG SCNSMAKESA  240
ENLEIVDPER EAGESNEFFD SVAESLSGGE GGGGEGSDVQ SSASLARKEK KGKEPVEPDS  300
EDQSPAIKRV SVESKPLVDF LEILRSHKFG SIFERRLESQ ETPKYKDLIR QHLDLETIRI  360
HVEQDSYSGC NIKFFRDLLL LFSNAILFYD KRCSEFKAAV ELRKLVLKEI PLKIPKSTSS  420
SKEQISPEAK PLNPDTEPSH PLVLKPRISV PIIACRKRSS ITAKASTSSS GPDKKRSQTV  480
PLLDEKLVLD WKTEEPRVTR KRTRERSSAN TKQPNNNVKN SVKTKKQADI NTNIVSSSKG  540
GSSNESSESK KAEKDKKNNV TSNTKKQSAA NFLNRMKQSG SPHNASLLSS SAASSDKGKV  600
GGEQKKNNNG NGNSKGDSRK NQTPRNSSIG KSVKENGSST KKSIGRPPKR AAAAASTPAA  660
MAGKRGREGG ETEAGSSGHL KKRSRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_85.76
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894008.10.0uncharacterized protein LOC110811752
TrEMBLA0A061EYH00.0A0A061EYH0_THECC; DNA-binding bromodomain-containing protein, putative
STRINGevm.model.supercontig_85.760.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-85DNA-binding bromodomain-containing protein