PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_84.59
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 358aa    MW: 39610.2 Da    PI: 5.2277
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_84.59genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-152168148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g W++eEd++l ++  + G g+W+ +ar  g+ R++k+c++rw +yl
  evm.model.supercontig_84.59 21 KGLWSPEEDDKLMNYMLRNGQGCWSDVARNAGLQRCGKSCRLRWINYL 68
                                 678*******************************************97 PP
2Myb_DNA-binding52.21.4e-1674117146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                  rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++
  evm.model.supercontig_84.59  74 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 117
                                  89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5211668IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-231671IPR009057Homeodomain-like
SuperFamilySSF466894.59E-2819115IPR009057Homeodomain-like
SMARTSM007173.5E-102070IPR001005SANT/Myb domain
PfamPF002491.4E-132168IPR001005SANT/Myb domain
CDDcd001677.19E-92468No hitNo description
PROSITE profilePS5129425.91869123IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2672124IPR009057Homeodomain-like
SMARTSM007174.9E-1673121IPR001005SANT/Myb domain
PfamPF002492.3E-1574117IPR001005SANT/Myb domain
CDDcd001671.12E-1176116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MRKPDLSGKT NNGGNNNKLR KGLWSPEEDD KLMNYMLRNG QGCWSDVARN AGLQRCGKSC  60
RLRWINYLRP DLKRGAFSPQ EEELIIHLHS LLGNRWSQIA ARLPGRTDNE IKNFWNSTIK  120
KRLKNLSSTA SPNTSDSSTE LNKDPVMAAA GGSGGFISLQ EHGNNMAMYN NMVDSSSSTS  180
SSMSAPPNSM QAMAFNHMMI DPLAPVLDRS LNIFGSAGGG FYPKATTPSC LAQIGVCADV  240
LYEQEPCVND IGVAGNLYIP PLETLQENSI STTENYPTPD YHHREININN YSSNNDQLNN  300
NSFMSTTNSF DNNKRVAENV AGVGNLWVEE DQLKLGEWDL EDLMKDVPSF PFLEFQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27191235108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_84.59
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894086.10.0transcription factor MYB83-like
TrEMBLA0A2C9VRH61e-127A0A2C9VRH6_MANES; Uncharacterized protein
STRINGevm.model.supercontig_84.590.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-61myb domain protein 46