PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_80.23
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 441aa    MW: 51352.3 Da    PI: 4.0073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_80.23genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.72.8e-2061223128
                          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                   Gf+F P+deel  + L+ +++g+  e+  ++ e+d y+ ePw      k+e +  y F++ +kk  + +r +r++  g+Wk
  evm.model.supercontig_80.23   6 IGFHFTPSDEELF-QILAMELRGEY-EV-GAVIEADPYEKEPWLVF-D-KNEPTTFYVFTSLKKK--SRSRMERKVGCGTWK 80 
                                  6***********9.78999999988.55.578899********995.2.2344455666666665..568************ PP

                          NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +  ev++ +++++g kk+L+f  ++++++e+ +W+mhey+l
  evm.model.supercontig_80.23  81 MERSA-EVVDWEENVIGFKKMLTFE-EKKKNTENGRWIMHEYSL 122
                                  88775.55555999**********8.5666779*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.4854136IPR003441NAC domain
SuperFamilySSF1019419.15E-246136IPR003441NAC domain
PfamPF023657.0E-146122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDVERIGFHF TPSDEELFQI LAMELRGEYE VGAVIEADPY EKEPWLVFDK NEPTTFYVFT  60
SLKKKSRSRM ERKVGCGTWK MERSAEVVDW EENVIGFKKM LTFEEKKKNT ENGRWIMHEY  120
SLRDFDDYVL CKIRNKSIDK LQQPTKIKLA YHQQDNSNNT YKRKLSADTE DHNQNKIQCI  180
NSSFVMSTTG DVRIVEEMII TAPLAAGDIN PFTAAALLAT EYNNRELVEE MTVVEPLASE  240
DINSLATVAP LTTEYNDREV VEEMTITAPL VARDINPLAT AIPLAAEYND GEIAEEMTVA  300
APLQDEVEQN DNLVFDIDEL WKEIGRKDNL IVDIEELWGE VEWSNNLVVD REEFGKEVEW  360
NDNLVVDIDE LWEEIERNDN LAVDREELWE QVEWSDNFVV DIEELREVEW NDNLVVDIDE  420
LWEEIEWKDN IAVDREELRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-12713623168NAC domain-containing protein 19
3swm_B8e-12713623168NAC domain-containing protein 19
3swm_C8e-12713623168NAC domain-containing protein 19
3swm_D8e-12713623168NAC domain-containing protein 19
3swp_A8e-12713623168NAC domain-containing protein 19
3swp_B8e-12713623168NAC domain-containing protein 19
3swp_C8e-12713623168NAC domain-containing protein 19
3swp_D8e-12713623168NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_80.23
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911077.10.0NAC domain-containing protein 55-like, partial
STRINGevm.model.supercontig_80.230.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.12e-13NAC domain containing protein 19