PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_78.15
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TALE
Protein Properties Length: 372aa    MW: 42196.9 Da    PI: 7.1881
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_78.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.1e-083063441854
                                  HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                     Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                  +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  evm.model.supercontig_78.15 306 MFHNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 344
                                  5776679******************************88 PP
2BELL77.52e-25186254372
                         BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                  + +q kk++Ll+ll+ V+++Y+q+  +++tv+s+F+a+++l++ ++++++Al++iS  +++L+d+i++qi
  evm.model.supercontig_78.15 186 RPVQTKKTQLLTLLQVVEDQYNQCLGEIHTVVSAFHAATELDP-QLHARFALQTISLLYKNLRDRIISQI 254
                                  5689***************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-19127252IPR006563POX domain
PfamPF075262.0E-22132250IPR006563POX domain
PROSITE profilePS5007110.965285348IPR001356Homeobox domain
CDDcd000861.97E-10288349No hitNo description
Gene3DG3DSA:1.10.10.601.9E-25288359IPR009057Homeodomain-like
SMARTSM003899.7E-6288352IPR001356Homeobox domain
SuperFamilySSF466891.21E-15289357IPR009057Homeodomain-like
PfamPF059201.2E-14305344IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEKNILNVRV DGMELQGDSN LLPTIFDSQQ LTSLSNIQQN SHQLPPSLYT ILASNQLLSD  60
FNTKFAAPSP AFQLNPAMPY LSPTPFSSYT NELSLSLATS HPAVISDHSS AAATSWNSCN  120
SNEISVPQFS QVILGSTYLQ AIQEILAQIA TYSLENSHEP SCLIDRIGIN PFSSERGMPW  180
RDIETRPVQT KKTQLLTLLQ VVEDQYNQCL GEIHTVVSAF HAATELDPQL HARFALQTIS  240
LLYKNLRDRI ISQILELGSD PWKPEKEGIL DNCFIQEQLK RKKHHQLWRP QRGLPEKSVS  300
VLRAWMFHNF LHPYPKDAEK HLLAVKSGLT RSQVSNWFIN ARVRLWKPMI EEMYAEMNRR  360
KGGRNEEGDH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-14294352563Homeobox protein Meis2
3k2a_B6e-14294352563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_78.15
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894865.10.0homeobox protein ATH1
RefseqXP_021894866.10.0homeobox protein ATH1
SwissprotP487311e-100ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2I4HSQ21e-115A0A2I4HSQ2_JUGRE; homeobox protein ATH1-like
STRINGevm.model.supercontig_78.150.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-93homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]