PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_75.57 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 241aa MW: 27029.1 Da PI: 7.7289 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.5 | 2.7e-09 | 37 | 61 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f++ G C+ G++C+FaHg evm.model.supercontig_75.57 37 FKTRVCAKFRA-GNCRNGENCNFAHG 61 69*********.*************9 PP | |||||||
2 | zf-CCCH | 27.9 | 4.2e-09 | 99 | 121 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yG+rC+F H evm.model.supercontig_75.57 99 MKLCKKFYNGEECPYGERCNFLH 121 689******66************ PP | |||||||
3 | zf-CCCH | 35 | 2.4e-11 | 177 | 203 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + t +C++ d+C+FaHg+ evm.model.supercontig_75.57 177 WKTKLCTKWETTSHCPFSDKCHFAHGQ 203 8************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-15 | 34 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-8 | 35 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-7 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-7 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.873 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 99 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 99 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-15 | 172 | 207 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-10 | 172 | 208 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 177 | 203 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MSHVNDEDNQ SSSSPYQSNS RTPINPPVNK GTSNIFFKTR VCAKFRAGNC RNGENCNFAH 60 GVEDLRQPPP NWQELVGARG DEERSSGNWE DDQRIIHRMK LCKKFYNGEE CPYGERCNFL 120 HEDPAKFRDD NRFRESSAIS IGTTPPPVVH GSGGTQSEVN RSANNNNMMM MMKPVYWKTK 180 LCTKWETTSH CPFSDKCHFA HGQAELQMFV GRVEGDGGNT TSTVAKPNIV AANDASMMKT 240 V |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_75.57 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895156.1 | 1e-180 | zinc finger CCCH domain-containing protein 39, partial | ||||
Swissprot | Q9LT81 | 3e-85 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A251JD93 | 1e-114 | A0A251JD93_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_75.57 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10066 | 25 | 36 | Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 6e-85 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_75.57 |