PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_70.104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26768.2 Da PI: 10.6691 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.1 | 6.2e-31 | 16 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lp G+rF+Pt+eel+v+yLk+k+ g +l++ +i+e+d+++++Pw Lp + +ek+ yfFsk ++ +g sg evm.model.supercontig_70.104 16 LPIGYRFRPTEEELLVHYLKRKAFGFPLPA-LIIPEFDVFTTDPWILPGDM--KEKNRYFFSKGSTMGING------SGSG 87 699*************************99.67***************665..67899****998876554......579* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128 yWk gk+k+++++ +++ g +k+L+fy + ++p+++kt+W+mheyrl evm.model.supercontig_70.104 88 YWKPIGKEKKIVASsgTNQILGSRKSLAFYeskkkkkktSHDHPHATKTRWIMHEYRL 145 ************997667779*********77665544335677788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-39 | 11 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.438 | 16 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-20 | 17 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MERSSSIFVV NGGIRLPIGY RFRPTEEELL VHYLKRKAFG FPLPALIIPE FDVFTTDPWI 60 LPGDMKEKNR YFFSKGSTMG INGSGSGYWK PIGKEKKIVA SSGTNQILGS RKSLAFYESK 120 KKKKKTSHDH PHATKTRWIM HEYRLSIPPT TQMSEKKHED DWSVYCVFQR KRKARRSHGS 180 NLPCRCSWKK KQEEEEARKS YKIALIILVL HRLLHQAPLM EPLKIVSLRH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-30 | 14 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-30 | 14 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-30 | 14 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-30 | 14 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-30 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-30 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-30 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-30 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-30 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-30 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-30 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-30 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-30 | 14 | 176 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-30 | 14 | 176 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 175 | QRKRKARR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_70.104 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895617.1 | 1e-148 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A061EEQ1 | 5e-57 | A0A061EEQ1_THECC; NAC domain containing protein 83, putative | ||||
STRING | evm.model.supercontig_70.104 | 1e-170 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 | Representative plant | OGRP11796 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 5e-48 | NAC domain containing protein 84 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_70.104 |