PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_66.20
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 110aa    MW: 12576.2 Da    PI: 5.6049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_66.20genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-052447123
                                 EEETTTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                 y C++Cg + s ks+ ++Hi + H
  evm.model.supercontig_66.20 24 YYCEYCGICRSKKSLITSHIIKeH 47
                                 89******************9988 PP
2zf-C2H221.56.3e-076990223
                                 EETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                 +C+ Cg sF+   +L++H+++H
  evm.model.supercontig_66.20 69 TCQECGASFRKAAYLNKHMQSH 90
                                 6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355302447IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1156895IPR007087Zinc finger, C2H2
SMARTSM003550.00546890IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.38E-569106No hitNo description
Gene3DG3DSA:3.30.160.609.6E-76991IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEEVEKNKEE GEEERPIFRD IRRYYCEYCG ICRSKKSLIT SHIIKEHQEE MTQEGAVGGA  60
EVEEVHSNTC QECGASFRKA AYLNKHMQSH SVEVLTLGFL LSCPYCRIV*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_66.20
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0884953e-53JN088495.1 Vasconcellea monoica clone BAC-MN13O12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896066.12e-58transcription factor IIIA isoform X1
RefseqXP_021896067.12e-58transcription factor IIIA isoform X1
SwissprotQ84MZ49e-19TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2C9WFP31e-32A0A2C9WFP3_MANES; Uncharacterized protein
TrEMBLA0A2C9WIB91e-32A0A2C9WIB9_MANES; Uncharacterized protein
STRINGevm.model.supercontig_66.202e-74(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2062733
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-18transcription factor IIIA