PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_65.159
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WOX
Protein Properties Length: 311aa    MW: 35438.1 Da    PI: 7.9229
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_65.159genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.71.7e-2281140357
                                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+++t+eql +Leel+++ +r+p+a++++++A+kl    +++ ++V++WFqN++a+e++
  evm.model.supercontig_65.159  81 SRWNPTPEQLLALEELYRQgTRTPTADQIQQIAAKLrrfgKIEGKNVFYWFQNHKARERQ 140
                                   8*****************99**************************************97 PP
2Wus_type_Homeobox115.23.1e-3780142365
             Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                   ++RW+PtpeQ+  Leely++G+rtP++++iq+i+a+L+++Gkie+kNVfyWFQN+kaRerqk+
  evm.model.supercontig_65.159  80 SSRWNPTPEQLLALEELYRQGTRTPTADQIQQIAAKLRRFGKIEGKNVFYWFQNHKARERQKR 142
                                   79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.66176141IPR001356Homeobox domain
SMARTSM003891.9E-678145IPR001356Homeobox domain
SuperFamilySSF466899.41E-1479146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-1081140IPR009057Homeodomain-like
PfamPF000465.0E-2081140IPR001356Homeobox domain
CDDcd000861.22E-682142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGCSDHSKDL NIKPLSSDTA QNFMSNYNTS SSQNTTTINT QLLHTCTPTN FLALNHHQGN  60
GSDHHHQQSS TEFSEQPLSS SRWNPTPEQL LALEELYRQG TRTPTADQIQ QIAAKLRRFG  120
KIEGKNVFYW FQNHKARERQ KRRRQVESVS HDQCEIQSLG KKDQVLRRTD YEFEQIESWT  180
AYSNCRKLIN EELIPKHGQA TEEASTGTTN EQNMKASYYS PIHLTNTITK PAPSHTNSSS  240
CSSLKANYFP NFLEDSESRE TQTLELFPLH SSGHNGNINC NKRETKLPIT SLINTKLTPS  300
QYFEFLPLKN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_65.159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_65.1590.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804879
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-39WUSCHEL related homeobox 1