PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_64.53
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 300aa    MW: 33757.4 Da    PI: 6.3083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_64.53genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.46.2e-152513220128
                          NAM  20 kkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevlsk 95 
                                  ++ ++g++ +  +v+++++ yk+ P++Lp     ++k++  F+ ++ + +++   +r+      t+ g+Wka+ +  e++s 
  evm.model.supercontig_64.53  25 TRMASGTSPPS-NVVTDINPYKYAPSNLP-----DSKRLRRFAMSEASLSKSLWLKRKfqenigTEYGIWKAKEEACEIFS- 99 
                                  34444444455.89***************.....33444445555555554444444333444499***************. PP

                          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  +++ +g + tL f++g+ p+ +k++W+m+e+++
  evm.model.supercontig_64.53 100 DTSIIGWRSTLEFHEGQVPDEHKSSWIMQEFTI 132
                                  999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.2637155IPR003441NAC domain
SuperFamilySSF1019412.48E-1825154IPR003441NAC domain
PfamPF023652.0E-560131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MFAPAASTTE IDFDCTLAEL FGLFTRMASG TSPPSNVVTD INPYKYAPSN LPDSKRLRRF  60
AMSEASLSKS LWLKRKFQEN IGTEYGIWKA KEEACEIFSD TSIIGWRSTL EFHEGQVPDE  120
HKSSWIMQEF TITQKRPSED SETKEAGILC RIFLDGVQNC YLDKQEKKSG PDIGTEFHDH  180
TKQLIVPIAD NNSGKGSSSN LLLAILRLNG SITDNICQVQ KGDKVEESPV SRKLTNYSAE  240
NLPELDYALE VITWSCWILI TQHHRLPVQK IQVAFPCHQT NILIHWLCCK SLGLKIVQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_64.53
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896393.11e-141LOW QUALITY PROTEIN: NAC domain-containing protein 30-like
TrEMBLA0A1L2DX961e-142A0A1L2DX96_CARPA; NAC2 protein (Fragment)
STRINGevm.model.supercontig_64.530.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Representative plantOGRP1216455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-14NAC domain containing protein 53